ViewGene

Locus Name:
GeneID:
Location:

GeneID:3028
TrivialName: PA14_26770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26770
PAO1 Ortholog Locus:PA2884
Sequence Length:765
Protein Length:254
Start: 2333165
Stop: 2332401
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06272.1|AE004714_9 (AE004714) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 254/254 (100%), Positives = 254/254 (100%)
Sequence:
ATGCTCGGGCGTCTGATACCGCTTCTACCCATTCTGTTCCTGCTCGGGGGCTTCTTCACCGGGCACATCGCG
CTGCTGACGGCGGTCATCGTCCTGCTCTACATCATCTGGGTGACCTACGCCGAACGCTGGCTGCCGACCCTG
CTCTGGTGGCCGGTGAGCCTCGCCGCCAGCGCCCTGATCGCCATCCACTACCTGCCCGGCTTCATTCCCCTG
CGCCTGTTCCCCTGGGACCTGGCCAGCGCCAGCCCGCCGATCCAGATGATCTGGCTGCCCTGGGACAAGGCC
CTGGTCGCCCTTACCCTGCTCGCCTGGTGGCTGCGCCGGCCGAAGCAGCCGCTGGTGTCGCTGGATATCACC
GCGCTGGCCTTCTGCCTGACCTTCTTCGTGGTGCCGCTGCTGTCGATCATGACCAATGCCGCGAGCTGGCAG
CCGAAGTGGCCGGATGCCTTCTGGTGGTGGCTGGTACTGAACGTCGGGGTGGTCTCCCTGGCCGAGGAGGCG
TTCTTCCGCGGCCTGCTGCAAAGCCAGTTGATCCGCTGGTTCGGCGCCTGGCCGGGAATCATCGTCGCGACC
CTCGCCTACGCCGCGCTGCACCTGCTGGTGAACCCGGTGTACGCGCTGCTGGCCGGGATCGCCGGGCTGGGC
TACGGCATGGTCCTGCACTTCAGCGGGCGGCTGTCCCTGGCGGTGCTGCTGCACGCTTCGATCAACACCCTG
CACTTCCTCCTGCTGAGCTACCCGTTCCGCCTGATCTCCGAGTGA
Translation:
MLGRLIPLLPILFLLGGFFTGHIALLTAVIVLLYIIWVTYAERWLPTLLWWPVSLAASALIAIHYLPGFIPL
RLFPWDLASASPPIQMIWLPWDKALVALTLLAWWLRRPKQPLVSLDITALAFCLTFFVVPLLSIMTNAASWQ
PKWPDAFWWWLVLNVGVVSLAEEAFFRGLLQSQLIRWFGAWPGIIVATLAYAALHLLVNPVYALLAGIAGLG
YGMVLHFSGRLSLAVLLHASINTLHFLLLSYPFRLISE*
AnnotationID:3036GeneID:3028
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 08:08:23
Gene Name:
Confidence Code:3
GeneProduct:putative protease
Cell Localization:()
Synonyms:PA2884
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:6059
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23201
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36145
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3028_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3028

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4893 PA2884_tr translation of PA2884 254 99.99 99.99 0 1341.0
138757 gb|AAG06272.1|AE004714_9 (AE004714) hypothetical protein PA2884 [Pseudomonas aeruginosa PAO1] 254 99.99 99.99 0 1341.0
GC ORFID: 46030How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2884Glimmer Score:
Start: 2620761Stop: 2621525
Length: 765
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2884 translation of PA2884Homolog Bit Score 521.0
Other Homologs: t_PA2884 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCGGGCGTCTGATACCGCTTCTACCCATTCTGTTCCTGCTCGGGGGCTTCTTCACCGGGCACATCGCG
CTGCTGACGGCGGTCATCGTCCTGCTCTACATCATCTGGGTGACCTACGCCGAACGCTGGCTGCCGACCCTG
CTCTGGTGGCCGGTGAGCCTCGCCGCCAGCGCCCTGATCGCCATCCACTACCTGCCCGGCTTCATTCCCCTG
CGCCTGTTCCCCTGGGACCTGGCCAGCGCCAGCCCGCCGATCCAGATGATCTGGCTGCCCTGGGACAAGGCC
CTGGTCGCCCTTACCCTGCTCGCCTGGTGGCTGCGCCGGCCGAAGCAGCCGCTGGTGTCGCTGGATATCACC
GCGCTGGCCTTCTGCCTGACCTTCTTCGTGGTGCCGCTGCTGTCGATCATGACCAATGCCGCGAGCTGGCAG
CCGAAGTGGCCGGATGCCTTCTGGTGGTGGCTGGTACTGAACGTCGGGGTGGTCTCCCTGGCCGAGGAGGCG
TTCTTCCGCGGCCTGCTGCAAAGCCAGTTGATCCGCTGGTTCGGCGCCTGGCCGGGAATCATCGTCGCGACC
CTCGCCTACGCCGCGCTGCACCTGCTGGTGAACCCGGTGTACGCGCTGCTGGCCGGGATCGCCGGGCTGGGC
TACGGCATGGTCCTGCACTTCAGCGGGCGGCTGTCCCTGGCGGTGCTGCTGCACGCTTCGATCAACACCCTG
CACTTCCTCCTGCTGAGCTACCCGTTCCGCCTGATCTCCGAGTGA