ViewGene
Locus Name:
GeneID:
Location:

GeneID:3027
TrivialName: PA14_26960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26960
PAO1 Ortholog Locus:PA2871
Sequence Length:798
Protein Length:265
Start: 2344848
Stop: 2345645
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06259.1|AE004713_8 (AE004713) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 263/265 (99%), Positives = 263/265 (99%)
Sequence:
ATGAATTTTTCCGAATTGATCCAGGCGGTCCGCCGTGACCCTTCCTCGGTGGTAGTACCGGCCAGTTGGGGC
CAGGGCCGCGCCACCTTCGGCGGCCTGGTGGTGGCGCTGGCCTACGAGGCCATGCTTGCGGTGGTCGAGGCG
GGGCGTCCGTTGCGCTCCATCGGCGTCAGCTTCGTCGGACCGCTGGCCCCCGAGCAGCCGGCGAGCTTCAGC
GCCCGGCTGTTGCGCGAGGGCAAGGCGGTGAGCCAGGTACAGGTCGAGGTCCGTCAGGGCGAGCAGGTGGTG
ACGCTGGTCCAGGCCAGTTTCGGCGTCGCCCGCGCGTCGGCGGTGGCGGTGGAAGCGTTGCCGGCGGCCGGG
ATGAAGGGCCCTGAAGAGAGCCAGGAGCTGCCCTATATCCGTAACGTGACCCCGGAGTTCACTCGCTACATC
GCCATGCGCTGGGCAGTGGGCGGCCTGCCGTTCTCTTCGAACAAGTCGCGCCAGATGGGCGGCTGGATGCGT
TTCCGCGACGAACCCGAGGGAGAGACCATGGAGGTTTCCCACTTGCTGGCGCTGCTCGACTCCTGGCCGCCG
GCGCTGTTGCCGCACCTGGGCACCCCGGCGATGGCCAGCTCGCTGACCTGGACCGCCGAGTTCCTCCAGCCG
CTGCCGCAGCAGCGCAGCGGCGACTGGTGCCGTTACCTGGCGGAGATCGAGGAGGCGCGCGACGGCTACGGC
CACGTGGCGGCGCGGATGTGGAGCGCCGACGGCCAGTTGCTGGCGATCAGCCGGCAGATGGTCACGGTGTTC
GGCTGA
Translation:
MNFSELIQAVRRDPSSVVVPASWGQGRATFGGLVVALAYEAMLAVVEAGRPLRSIGVSFVGPLAPEQPASFS
ARLLREGKAVSQVQVEVRQGEQVVTLVQASFGVARASAVAVEALPAAGMKGPEESQELPYIRNVTPEFTRYI
AMRWAVGGLPFSSNKSRQMGGWMRFRDEPEGETMEVSHLLALLDSWPPALLPHLGTPAMASSLTWTAEFLQP
LPQQRSGDWCRYLAEIEEARDGYGHVAARMWSADGQLLAISRQMVTVFG*
AnnotationID:3035GeneID:3027
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 07:07:21
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA thioesterase
Cell Localization:()
Synonyms:PA2871
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1946
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67921.1|AE016424_7 (AE016782) acyl-CoA thioesterase II, putative [Pseudomonas putida
           KT2440]
          Length = 265

 Score =  302 bits (773), Expect = 2e-81
 Identities = 149/265 (56%), Positives = 187/265 (70%), Gaps = 2/265 (0%)






 
Structural Features:
COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:6057




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23199




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36198




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3027_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3027
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4892
                           PA2871_tr
                           translation of PA2871
                           265
                           99.24
                           99.24
                           0
                           1343.0
     

     
     
138755
                           gb|AAG06259.1|AE004713_8
                           (AE004713) hypothetical protein PA2871 [Pseudomonas aeruginosa PAO1]
                           265
                           99.24
                           99.24
                           0
                           1343.0
     

     
     
138756
                           gb|AAN67921.1|AE016424_7
                           (AE016782) acyl-CoA thioesterase II, putative [Pseudomonas putida KT2440]
                           266
                           56.01
                           70.30
                           2
                           777.0
     

     






      

          
GC ORFID: 46029How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2871Glimmer Score: 

          
Start: 2609078Stop: 2608281

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2871 translation of PA2871Homolog Bit Score 521.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1044 (ORF: BLASTX 306.0), t_PA2871 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTTTTCCGAATTGATCCAGGCGGTCCGCCGTGACCCTTCCTCGGTGGTAGTACCGGCCAGTTGGGGC 
CAGGGCCGCGCCACCTTCGGCGGCCTGGTGGTGGCGCTGGCCTACGAGGCCATGCTTGCGGTGGTCGAGGCG 
GGGCGTCCGTTGCGCTCCATCGGCGTCAGCTTCGTCGGACCGCTGGCCCCCGAGCAGCCGGCGAGCTTCAGC 
GCCCGGCTGTTGCGCGAGGGCAAGGCGGTGAGCCAGGTACAGGTCGAGGTCCGTCAGGGCGAGCAGGTGGTG 
ACGCTGGTCCAGGCCAGTTTCGGCGTCGCCCGCGCGTCGGCGGTGGCGGTGGAAGCGTTGCCGGCGGCCGGG 
ATGAAGGGCCCTGAAGAGAGCCAGGAGCTGCCCTATATCCGTAACGTGACCCCGGAGTTCACTCGCTACATC 
GCCATGCGCTGGGCAGTGGGCGGCCTGCCGTTCTCTTCGAACAAGTCGCGCCAGATGGGCGGCTGGATGCGT 
TTCCGCGACGAACCCGAGGGAGAGACCATGGAGGTTTCCCACTTGCTGGCGCTGCTCGACTCCTGGCCGCCG 
GCGCTGTTGCCGCACCTGGGCACCCCGGCGATGGCCAGCTCGCTGACCTGGACCGCCGAGTTCCTCCAGCCG 
CTGCCGCAGCAGCGCAGCGGCGACTGGTGCCGTTACCTGGCGGAGATCGAGGAGGCGCGCGACGGCTACGGC 
CACGTGGCGGCGCGGATGTGGAGCGCCGACGGCCAGTTGCTGGCGATCAGCCGGCAGATGGTCACGGTGTTC 
GGCTGA