ViewGene
Locus Name:
GeneID:
Location:

GeneID:3025
TrivialName: PA14_30070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30070
PAO1 Ortholog Locus:PA2633
Sequence Length:822
Protein Length:273
Start: 2605569
Stop: 2604748
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06021.1|AE004691_12 (AE004691) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 270/273 (98%), Positives = 271/273 (99%)
Sequence:
GTGACCCTGTTGCGCACCACCCTGCTCTCCTCGCTGTTGGCGACAGTCGCTCTCGGCGCCTCGGCCGCCCCG
CGCACCGAAGTGATCCCGCTCAACTACCGCACCGCCGACGACGTGATCGCGGTGGCCCAGTCGGTCATCGGC
AGCGAAGGCAAGGTCACCGCCTATGGCAACCAGCTGATCGTCAATGCCGAGCCGGCGAAGATCCGCGAGTTG
CAATCGGTCCTGCAGCAGATCGACTCGCGCCCGCATCGCCTGCTGATCACCGTGGATACCAGCGAGAACCTG
CAACAGGACAGCCGCGGCTATTCGGTGGATGGTTCGGCCAGCGCCGGCAACATCGAGATCCAGAGCGGCCGC
GGCGAGGTCAACGGCAAGGATCGCGTCCGCATCATCCGTCGCTCCACCGACAGCCGTTCCGGCGGCAGCCAG
CAGGTCCAGGCCACCGAGGGCTACCCGGCGCTGATCCAGGTCGGCCAGAGCGTCCCCATCACCAGCACCGCC
ACCGGTCCCTACGGGCAGATCTACAGCCAGACCGAATACCGCAACGTCAACCGCGGCTTCTACGTCACCGCG
ACGCTGACCGGCAACCTGGTGCACGTCACCATCAGCTCCAGCAATGACCGCCTCAGCCAGAGCCATCCCGGC
GTCATCGATACCCAGAGCACCGACACCCGGGTCAGCGGCAAGCTCGGCGAGTGGATCACCCTGGGCGGTGTC
AGCGAACAGAACCAGGCCGACCAGCACGGCTTCGTGCGTCGCTACTCGACCCAGGGACGCGACGACACCAGC
CTGCGCCTGAAAGTCGAAACCCTCGACTGA
Translation:
MTLLRTTLLSSLLATVALGASAAPRTEVIPLNYRTADDVIAVAQSVIGSEGKVTAYGNQLIVNAEPAKIREL
QSVLQQIDSRPHRLLITVDTSENLQQDSRGYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQ
QVQATEGYPALIQVGQSVPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGNLVHVTISSSNDRLSQSHPG
VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQHGFVRRYSTQGRDDTSLRLKVETLD*
AnnotationID:3033GeneID:3025
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:26
Gene Name:
Confidence Code:3
GeneProduct:putative secretion system protein
Cell Localization:()
Synonyms:PA2633
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56841.1| (AE016868) type II and III secretion system family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 248

 Score =  259 bits (662), Expect = 1e-68
 Identities = 141/271 (52%), Positives = 185/271 (68%), Gaps = 29/271 (10%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14723




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23195




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33215




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3025_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3025
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4889
                           PA2633_tr
                           translation of PA2633
                           273
                           98.90
                           99.26
                           0
                           1342.0
     

     
     
138636
                           gb|AAG06021.1|AE004691_12
                           (AE004691) hypothetical protein PA2633 [Pseudomonas aeruginosa PAO1]
                           273
                           98.53
                           99.26
                           0
                           1339.0
     

     
     
138637
                           gb|AAO56841.1|
                           (AE016868) type II and III secretion system family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           276
                           51.08
                           67.39
                           31
                           680.0
     

     
     
138638
                           gb|AAN69698.1|AE016606_1
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           294
                           43.19
                           60.88
                           48
                           612.0
     

     






      

          
GC ORFID: 46027How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2633Glimmer Score: 

          
Start: 2348357Stop: 2349178

          
Length: 822


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2633 translation of PA2633Homolog Bit Score 521.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2762 (ORF: BLASTX 260.0), t_PA2633 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCCTGTTGCGCACCACCCTGCTCTCCTCGCTGTTGGCGACAGTCGCTCTCGGCGCCTCGGCCGCCCCG 
CGCACCGAAGTGATCCCGCTCAACTACCGCACCGCCGACGACGTGATCGCGGTGGCCCAGTCGGTCATCGGC 
AGCGAAGGCAAGGTCACCGCCTATGGCAACCAGCTGATCGTCAATGCCGAGCCGGCGAAGATCCGCGAGTTG 
CAATCGGTCCTGCAGCAGATCGACTCGCGCCCGCATCGCCTGCTGATCACCGTGGATACCAGCGAGAACCTG 
CAACAGGACAGCCGCGGCTATTCGGTGGATGGTTCGGCCAGCGCCGGCAACATCGAGATCCAGAGCGGCCGC 
GGCGAGGTCAACGGCAAGGATCGCGTCCGCATCATCCGTCGCTCCACCGACAGCCGTTCCGGCGGCAGCCAG 
CAGGTCCAGGCCACCGAGGGCTACCCGGCGCTGATCCAGGTCGGCCAGAGCGTCCCCATCACCAGCACCGCC 
ACCGGTCCCTACGGGCAGATCTACAGCCAGACCGAATACCGCAACGTCAACCGCGGCTTCTACGTCACCGCG 
ACGCTGACCGGCAACCTGGTGCACGTCACCATCAGCTCCAGCAATGACCGCCTCAGCCAGAGCCATCCCGGC 
GTCATCGATACCCAGAGCACCGACACCCGGGTCAGCGGCAAGCTCGGCGAGTGGATCACCCTGGGCGGTGTC 
AGCGAACAGAACCAGGCCGACCAGCACGGCTTCGTGCGTCGCTACTCGACCCAGGGACGCGACGACACCAGC 
CTGCGCCTGAAAGTCGAAACCCTCGACTGA