ViewGene
Locus Name:
GeneID:
Location:

GeneID:3023
TrivialName: PA14_48200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48200
PAO1 Ortholog Locus:PA1240
Sequence Length:798
Protein Length:265
Start: 4291948
Stop: 4292745
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04629.1|AE004553_6 (AE004553) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 265/265 (100%), Positives = 265/265 (100%)
Sequence:
ATGAGCGAAGCCAACAGCGGCCCGGGCCGCGTCACCCGAGAGCAGCGCGGTCATCTGTTTCTCATCGGCCTG
GACCGCGCGGGCAAGCGCAACGCCTTCGACAGCGCAATGCTGGCGGACCTGGCGCTGGCCATGGGTGAATAC
GAGCGCAGCGAGGAATCCCGCTGTGCCGTGCTCTTCGCCCATGGCGAGCACTTCACCGCCGGGCTCGACCTG
ATGGAACTGGCACCGAAGCTCGCCGCCAGCGGTTTCCGCTATCCGGACGGCGGCGTCGATCCCTGGGGCGTG
GTCCAGCCGCGTCGGAGCAAGCCGCTGGTAGTCGCGGTGCAAGGCACCTGCTGGACCGCCGGGATAGAGCTA
ATGCTCAATGCCGACATCGCGGTGGCCGCGCGCGGCACGCGCTTCGCCCATCTGGAGGTGCTACGCGGCATC
CCGCCGCTGGGCGGATCCACCGTGCGCTTCCCGCGTGCGGCGGGCTGGACCGACGCCATGCGCTACATCCTC
ACCGGCGATGAGTTCGATGCCGACGAAGCCCTGCGCATGCGCCTGCTCACCGAGGTGGTGGAACCCGGCGAG
GAACTGGCACGGGCCCTCGAATACGCCGAGCGGATCGCCCGGGCCGCGCCGCTGGCGGTGCGCGCCGCGCTG
CAATCGGCGTTCCAGGGGCGCGACGAGGGGGACGATGCGGCGCTGTCGCGGGTCAACGAGTCGCTGGCCGCG
TTGATCGGCAGCGAGGACGTCCGCGAGGGCGTGCTGGCGATGGTGCAAAAGCGCGCGCCGGCGTTCAAAGGC
CGCTAG
Translation:
MSEANSGPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDL
MELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGI
PPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVRAAL
QSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMVQKRAPAFKGR*
AnnotationID:3031GeneID:3023
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 21:09:49
Gene Name:
Confidence Code:3
GeneProduct:putative enoyl-CoA hydratase/isomerase
Cell Localization:()
Synonyms:PA1240
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1024,pfam00378
Secondary Functional Category(ies):putative enzyme
EC Number:4.2.1.17
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31621.1| (BX640440) putative enoyl-CoA hydratase [Bordetella bronchiseptica]
          Length = 262

 Score =  183 bits (465), Expect = 8e-46
 Identities = 108/263 (41%), Positives = 153/263 (58%), Gaps = 2/263 (0%)







 
Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase 
[Lipid metabolism]
CD-Length = 257 residues,  98.1% aligned
Score =  158 bits (400), Expect = 6e-40
Identities = 91/254 (35%), Positives = 120/254 (47%), Gaps = 3/254 (1%)

pfam00378, ECH, Enoyl-CoA hydratase/isomerase family.
CD-Length = 168 residues,  99.4% aligned
Score = 95.3 bits (237), Expect = 8e-21
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 4/170 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6049




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23191




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37531




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3023_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3023
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4886
                           PA1240_tr
                           translation of PA1240
                           265
                           99.99
                           99.99
                           0
                           1342.0
     

     
     
138534
                           gb|AAG04629.1|AE004553_6
                           (AE004553) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           265
                           99.99
                           99.99
                           0
                           1342.0
     

     
     
4887
                           PA2841_tr
                           translation of PA2841
                           266
                           54.51
                           69.54
                           4
                           698.0
     

     
     
138535
                           gb|AAG06229.1|AE004711_1
                           (AE004711) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           266
                           54.51
                           69.54
                           4
                           698.0
     

     
     
138536
                           emb|CAE31621.1|
                           (BX640440) putative enoyl-CoA hydratase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           268
                           40.67
                           57.08
                           9
                           469.0
     

     






      

          
GC ORFID: 46025How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1240Glimmer Score: 

          
Start: 661960Stop: 661163

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1240 translation of PA1240Homolog Bit Score 521.0

          
Other Homologs:  t_PA2841 (ORF: BLASTX 274.0), t_PA1240 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAAGCCAACAGCGGCCCGGGCCGCGTCACCCGAGAGCAGCGCGGTCATCTGTTTCTCATCGGCCTG 
GACCGCGCGGGCAAGCGCAACGCCTTCGACAGCGCAATGCTGGCGGACCTGGCGCTGGCCATGGGTGAATAC 
GAGCGCAGCGAGGAATCCCGCTGTGCCGTGCTCTTCGCCCATGGCGAGCACTTCACCGCCGGGCTCGACCTG 
ATGGAACTGGCACCGAAGCTCGCCGCCAGCGGTTTCCGCTATCCGGACGGCGGCGTCGATCCCTGGGGCGTG 
GTCCAGCCGCGTCGGAGCAAGCCGCTGGTAGTCGCGGTGCAAGGCACCTGCTGGACCGCCGGGATAGAGCTA 
ATGCTCAATGCCGACATCGCGGTGGCCGCGCGCGGCACGCGCTTCGCCCATCTGGAGGTGCTACGCGGCATC 
CCGCCGCTGGGCGGATCCACCGTGCGCTTCCCGCGTGCGGCGGGCTGGACCGACGCCATGCGCTACATCCTC 
ACCGGCGATGAGTTCGATGCCGACGAAGCCCTGCGCATGCGCCTGCTCACCGAGGTGGTGGAACCCGGCGAG 
GAACTGGCACGGGCCCTCGAATACGCCGAGCGGATCGCCCGGGCCGCGCCGCTGGCGGTGCGCGCCGCGCTG 
CAATCGGCGTTCCAGGGGCGCGACGAGGGGGACGATGCGGCGCTGTCGCGGGTCAACGAGTCGCTGGCCGCG 
TTGATCGGCAGCGAGGACGTCCGCGAGGGCGTGCTGGCGATGGTGCAAAAGCGCGCGCCGGCGTTCAAAGGC 
CGCTAG