ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3022

TrivialName: PA14_50040

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_50040

PAO1 Ortholog Locus: PA1109

Sequence Length: 780

Protein Length: 259

Start: 4448621

Stop: 4447842

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04498.1|AE004541_3 (AE004541) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 258/259 (99%), Positives = 258/259 (99%)

Sequence:

GTGCCGCGCTATCCCTACGAACGGGTCGAGGATCCCGATCTCGCCCGCTGCCCGGTGGTCGGCCTCGAGGTC
GACAGCACCGGCCACCGCAGCGACTGGCATTGCCACCGGCGCGCGCAGTTGCTGTACATGGCGGCCGGTAGC
GTCACGCTGTATTTCGCCGAGCGCATTTGCCAATTGACGTCGCTCCAGGCCGCCTGGCTGCCGGCCGGCGTG
CCGCATCGCACGGTCCTTCACGGGCGCTTCGCCTACCGTAGCCTGTACTTCGAACCCTCGGCGTTCGCCGAG
CTGCCGGACAGCGTCCAGGTCCTCGAGGTCGGGCCGCTAATGCGCGAACTGATTCTGCGCATGACCGGCTGG
GCAGCCGACTTGCAATTGGAAGGGCCGCACCTGACGCTGTTGCGCGCACTGTTCGATGAACTGGCGAGCGCG
CCGGCACACGCCGCGAGCCTGCCGATGCCGCGCGATGCGCGGGCGCTGAAGGTGGCCGAGGCGCTGCTGGCG
CAACCCGCGCTGGACTGGAGCATCGAGGCGTGGGGACGTGAGGTCGGCGCCAGCGGGCGGACCCTGGCGCGT
CTGTTCACCGAGCAGACCGGCCTGGGTTTCTCCCGCTGGCGAACCCAGGCGCGCTTGTTCGAAGCGCGGAGG
CGCCTGGCCGAAGGCCGCTCGGTGACCGAGGTCGCCCACGCCCTGGGCTACGCCAGCGACAGCGCGTTCATC
GCCATGTACCGGCGGGTCTGCGGGCAGTCGCCGGGGCGCGCCCTGCGTGGCCTCGAATGA

Translation:

MPRYPYERVEDPDLARCPVVGLEVDSTGHRSDWHCHRRAQLLYMAAGSVTLYFAERICQLTSLQAAWLPAGV
PHRTVLHGRFAYRSLYFEPSAFAELPDSVQVLEVGPLMRELILRMTGWAADLQLEGPHLTLLRALFDELASA
PAHAASLPMPRDARALKVAEALLAQPALDWSIEAWGREVGASGRTLARLFTEQTGLGFSRWRTQARLFEARR
RLAEGRSVTEVAHALGYASDSAFIAMYRRVCGQSPGRALRGLE*

AnnotationID:3030 GeneID:3022

AnnotatorUID: danlee

Modification Date/Time: 2004-06-23 13:01:11

Gene Name:

Confidence Code: 3

GeneProduct: probable transcriptional regulator

Cell Localization: ()

Synonyms: PA1109

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2207, AraC, AraC-type DNA-binding domain-containing proteins.
             CD-Length = 127 residues,  96.1% aligned
             Score = 81.8 bits (201), Expect = 8e-17
pfam02311, AraC_binding, AraC-like ligand binding domain. Score: 60.5, 2e-10

Genomic Context:

Comment:

ReferenceID:14721

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23189

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3022

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4884 PA1109_tr translation of PA1109 259 99.61 99.61 0 1341.0

138527 gb|AAG04498.1|AE004541_3 (AE004541) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 259 99.22 99.61 0 1338.0

4885 PA1599_tr translation of PA1599 270 39.25 51.11 21 391.0

138533 gb|AAG04988.1|AE004588_1 (AE004588) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 270 39.25 51.11 21 391.0

138531 gb|AAQ59499.1| (AE016916) probable transcriptional regulator, AraC family [Chromobacterium violaceum ATCC 12472] 273 38.46 50.18 17 402.0

GC ORFID: `46024`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1109`	Glimmer Score:
Start: `505287`	Stop: `506066`
Length: `780`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1109 translation of PA1109`	Homolog Bit Score `521.0`
Other Homologs: `t_PA1599 (ORF: BLASTX 153.0), t_PA1109 (ORF: GLIMMER)`
GC ORF Sequence
GTGCCGCGCTATCCCTACGAACGGGTCGAGGATCCCGATCTCGCCCGCTGCCCGGTGGTCGGCCTCGAGGTC GACAGCACCGGCCACCGCAGCGACTGGCATTGCCACCGGCGCGCGCAGTTGCTGTACATGGCGGCCGGTAGC GTCACGCTGTATTTCGCCGAGCGCATTTGCCAATTGACGTCGCTCCAGGCCGCCTGGCTGCCGGCCGGCGTG CCGCATCGCACGGTCCTTCACGGGCGCTTCGCCTACCGTAGCCTGTACTTCGAACCCTCGGCGTTCGCCGAG CTGCCGGACAGCGTCCAGGTCCTCGAGGTCGGGCCGCTAATGCGCGAACTGATTCTGCGCATGACCGGCTGG GCAGCCGACTTGCAATTGGAAGGGCCGCACCTGACGCTGTTGCGCGCACTGTTCGATGAACTGGCGAGCGCG CCGGCACACGCCGCGAGCCTGCCGATGCCGCGCGATGCGCGGGCGCTGAAGGTGGCCGAGGCGCTGCTGGCG CAACCCGCGCTGGACTGGAGCATCGAGGCGTGGGGACGTGAGGTCGGCGCCAGCGGGCGGACCCTGGCGCGT CTGTTCACCGAGCAGACCGGCCTGGGTTTCTCCCGCTGGCGAACCCAGGCGCGCTTGTTCGAAGCGCGGAGG CGCCTGGCCGAAGGCCGCTCGGTGACCGAGGTCGCCCACGCCCTGGGCTACGCCAGCGACAGCGCGTTCATC GCCATGTACCGGCGGGTCTGCGGGCAGTCGCCGGGGCGCGCCCTGCGTGGCCTCGAATGA