ViewGene
Locus Name:
GeneID:
Location:

GeneID:3021
TrivialName: PA14_53090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53090
PAO1 Ortholog Locus:PA0864
Sequence Length:789
Protein Length:262
Start: 4706093
Stop: 4706881
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04253.1|AE004521_4 (AE004521) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 261/262 (99%), Positives = 262/262 (100%)
Sequence:
ATGGCACGACCCGCCCCACCCGACCTGAGCGACAGCCGCCGGCCCCTGCGCGGCGTCGCCCGCAGCTATCCT
GCCGGGCACCGCGTCGATGCCCACGAGCACGCCTGGGGCCAGGTGCTCTATGCGGTGTCCGGGATGATGTGG
CTGGAGACGCCCGACGAGGCCCTGCCGGTCCCGCCGCAACGGGCGGTCTGGTTGCCTCCGGGCCTGCGCCAT
GCGGTGCGGATCGCGTCCGAGTTGCAGATGCGCAACATCTACCTGAGCCCGGAACTCTCCCGCGGCCTGGAG
GACCGCACCCTGGTGCTGGTGGTCGGCCCGCTGCTGCGCGAGCTGATCGTCAGCCTGGTGGAGCAGGAACGA
CAGAGCGACCCCCACTACTATCGGGCGCTGGCCGATCTCGCCGTGCTCGAACTCGGTCGCGCGCGCCGTTCC
AGCCTCCGCGTACCGCTGCCGGACGCCTCCGACAGGCGCCTGCTCGCGCTGTGCCAGGCGGTGATGGCCAAT
CCCTCCCTGGACATCGGCCTGGAGCGCCTGGCCGAAGACGCCGGGGCCAGCGTGCGGACCCTCTCGCGCCTG
TTCCAGCGCAGCCTGGGCATGGGCTTCGCCGACTGGCGGCGGCAGGTGCAACTGGCGACCGCCGCCGCCGCA
CTGATCGATGGCCGTCCGGTGGCGGGCATCGCCCATGCCCTGGGATATACGCCGAGCGCCTTCAGCGACATG
TTCCGCCGCGAGCTGGGCGTCTCTCCCACCGAGTACAGGGCCGAGCATCACCAGCCGTTCCAGCCTTGA
Translation:
MARPAPPDLSDSRRPLRGVARSYPAGHRVDAHEHAWGQVLYAVSGMMWLETPDEALPVPPQRAVWLPPGLRH
AVRIASELQMRNIYLSPELSRGLEDRTLVLVVGPLLRELIVSLVEQERQSDPHYYRALADLAVLELGRARRS
SLRVPLPDASDRRLLALCQAVMANPSLDIGLERLAEDAGASVRTLSRLFQRSLGMGFADWRRQVQLATAAAA
LIDGRPVAGIAHALGYTPSAFSDMFRRELGVSPTEYRAEHHQPFQP*
AnnotationID:3029GeneID:3021
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 10:10:46
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0864
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207, smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins.  Score: 81.1, 3e-16
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein. Score: 76.0, 1e-14






   
Genomic Context:






   
Comment:


















    ReferenceID:6045




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23187




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3021
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4882
                           PA0864_tr
                           translation of PA0864
                           262
                           99.61
                           99.99
                           0
                           1343.0
     

     
     
138523
                           gb|AAG04253.1|AE004521_4
                           (AE004521) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           262
                           99.61
                           99.99
                           0
                           1343.0
     

     
     
4883
                           PA3830_tr
                           translation of PA3830
                           286
                           39.51
                           52.09
                           40
                           434.0
     

     
     
138525
                           gb|AAG07217.1|AE004800_6
                           (AE004800) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           286
                           39.51
                           52.09
                           40
                           434.0
     

     
     
138526
                           gb|AAQ58475.1|
                           (AE016912) probable transcriptional regulator, AraC/XylS family [Chromobacterium violaceum ATCC 12472]
                           265
                           38.86
                           49.81
                           11
                           403.0
     

     






      

          
GC ORFID: 46023How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0864Glimmer Score: 

          
Start: 247814Stop: 247026

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0864 translation of PA0864Homolog Bit Score 521.0

          
Other Homologs:  t_PA3830 (ORF: BLASTX 166.0), t_PA0864 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACGACCCGCCCCACCCGACCTGAGCGACAGCCGCCGGCCCCTGCGCGGCGTCGCCCGCAGCTATCCT 
GCCGGGCACCGCGTCGATGCCCACGAGCACGCCTGGGGCCAGGTGCTCTATGCGGTGTCCGGGATGATGTGG 
CTGGAGACGCCCGACGAGGCCCTGCCGGTCCCGCCGCAACGGGCGGTCTGGTTGCCTCCGGGCCTGCGCCAT 
GCGGTGCGGATCGCGTCCGAGTTGCAGATGCGCAACATCTACCTGAGCCCGGAACTCTCCCGCGGCCTGGAG 
GACCGCACCCTGGTGCTGGTGGTCGGCCCGCTGCTGCGCGAGCTGATCGTCAGCCTGGTGGAGCAGGAACGA 
CAGAGCGACCCCCACTACTATCGGGCGCTGGCCGATCTCGCCGTGCTCGAACTCGGTCGCGCGCGCCGTTCC 
AGCCTCCGCGTACCGCTGCCGGACGCCTCCGACAGGCGCCTGCTCGCGCTGTGCCAGGCGGTGATGGCCAAT 
CCCTCCCTGGACATCGGCCTGGAGCGCCTGGCCGAAGACGCCGGGGCCAGCGTGCGGACCCTCTCGCGCCTG 
TTCCAGCGCAGCCTGGGCATGGGCTTCGCCGACTGGCGGCGGCAGGTGCAACTGGCGACCGCCGCCGCCGCA 
CTGATCGATGGCCGTCCGGTGGCGGGCATCGCCCATGCCCTGGGATATACGCCGAGCGCCTTCAGCGACATG 
TTCCGCCGCGAGCTGGGCGTCTCTCCCACCGAGTACAGGGCCGAGCATCACCAGCCGTTCCAGCCTTGA