ViewGene

Locus Name:
GeneID:
Location:

GeneID: 302

TrivialName: PA14_54180

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_54180

PAO1 Ortholog Locus: PA0781

Sequence Length: 2064

Protein Length: 687

Start: 4806630

Stop: 4808693

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04170.1|AE004513_2 (AE004513) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 685/687 (99%), Positives = 686/687 (99%)

Sequence:

ATGTCCTCTTCCGGCCTTTTCCCTTCCCGTCCGCTCTGGCCTCTCACGCCACTGGCGCTGGCCTGCCTGATC
GTTTCGGGGGAAACGCTCGGCGCCGACGGCCGCCCCAGCGAATTGCCCTCCCAGGTGATCACCGCCAACCCG
CTGGGCAACGAATCTCCCGCCACGCCCAGCAGCGTGCTCGAAGGCGACGAGCTGACCCTGCGTCAGAAAGGC
AGCCTCGGCGAAACCCTCAACGGCCTGCCCGGGGTGTCCTCCACCTACTTCGGACCGGGCGCCAGCCGACCG
GTGATCCGCGGCATGGACGGCGACCGCATCCGCCTGCTGCGCAACGGCGTCGGCGCGCTCGACGCCTCGTCG
CTGTCCTACGACCACGCGGTGCCGGAAGACCCCAACAGCGTCGAGCGCCTGGAAGTGGTACGCGGCCCGGCC
GCCCTGCTCTACGGCGGCAATGCCATCGGCGGGGTGGTGAACAGCTTCGACAACCGCATTCCCAGCGAACCC
GTCGACGGCATCCACGGCAGCGGCGAACTGCGCTACGGCGGCGCCGACACCACCCGTAGCCGCTCCGGCGCA
CTGGAGGCCGGCGACGGCAACTTCGCCCTGCACGTGGACGCCGCCAGCCGCGAGTTCAACGACGTCAGGATT
CCCGGCTACGCCCATTCCAGCCGCCAGCGGCAGATCGACGGCGACACCGGCAAGCATCGGGTGCAGAACAGC
GACGGCCGCCAGGACGGCGGCGCCGTCGGTGGCTCCTATCACTGGGAGCACGGTTACGCCGGCCTCTCCTAC
AGCGGCTACGACAGCAACTATGGCTCGCCGGCCGAGGACGACGTGCGCCTGAAGATGCAGCAGGACCGCTAC
GCCTTCGCCTCCGAGATCCGCGACCTCGAAGGCCCGTTCACCTCGCTGAAGCTGGACGCCGCCTATACCAAG
TACGAGCACAAGGAAATCGAGGACGGCGAGACCGGCACCACCTTCAAGAACGAAGGCTACGAAGGCCGCATC
GAGGCCCGCCACCGCCCGCTCGGCCCGCTGAACGGGGTGGTCGGCGCGCAGTTCGCCAACAGCCGCTTCTCC
GCCCTCGGCGAGGAAGCCTTCGTGCCGCACACGGAAACCGACAGCGCCGCGCTGTTCGCCCTGGAGGAATGG
AAGCTCAGCGACCGCCTCGACCTCAGCTTCGGCGCCCGCCTGGAGCACACCCGCGTGGACCCCGACGCCAAG
GGCAACGAGCGCTTCGCCGAGAACGACGGTTCGCAGAGCTTCACCACCGGCAGCCTGTCCACCGGCGCGGTG
TACAAGCTGACGCCGATCTGGTCGCTGGCCGCCACCCTCAGCTACACCGAGCGCGCACCGACCTTCTACGAG
CTGTACGCCAACGGTCCGCACGCCGCCACCGGCACCTACGAGGTAGGCGATGCCGACGCGGACAAGGAAAAG
GCGGTCTCCACCGACCTCGCCCTGCGCTTCGACAACGGCGTGCACAGGGGCAGCGTCGGGGTGTTCTACAGC
CGCTTCTCCAACTACATCGGCCTGCTCGCCAGCGGTCGCCATCGCAACGAGGAAGGCGAAGTGGTCGCCGCC
AGCGACGACGAGGCGCTGCCGGAATACCTCTACAGCGGCGTTCGCGCGGACTTCTACGGCGTCGAGGCGCAG
GACCGCATCCACCTGCTGGAAAGCCCGTACGGCAACTTCGACCTGGAACTCTCCGGGGACTACACCCGCGCC
AAGAACAAGGACACCGGCGAACCGCTGCCACGCATCGCCCCGCTACGCCTGAACACCGCGCTGATCTGGGAG
TTGCAGCAGTGGCAGGCGCGGGTCGACGTCGAACACGCCGCCTCGCAGCACCGCGTGCCGGAGGAAGAACTC
TCCACCGACGGCTACACCACCCTCGGCGCCAGCCTCGGCTACAACTTCGACCTCGGCGAGAGCCGCTGGCTG
GCCTTCGTCAAGGGCACCAACCTGACCAACCAGACCGTGCGCTACGCCAGTTCGATCCTGCGCGACCGGGTG
CCGGCGGCGGGACGCGGCATCGAGGCGGGGGTGAAGGTGGCGTTCTGA

Translation:

MSSSGLFPSRPLWPLTPLALACLIVSGETLGADGRPSELPSQVITANPLGNESPATPSSVLEGDELTLRQKG
SLGETLNGLPGVSSTYFGPGASRPVIRGMDGDRIRLLRNGVGALDASSLSYDHAVPEDPNSVERLEVVRGPA
ALLYGGNAIGGVVNSFDNRIPSEPVDGIHGSGELRYGGADTTRSRSGALEAGDGNFALHVDAASREFNDVRI
PGYAHSSRQRQIDGDTGKHRVQNSDGRQDGGAVGGSYHWEHGYAGLSYSGYDSNYGSPAEDDVRLKMQQDRY
AFASEIRDLEGPFTSLKLDAAYTKYEHKEIEDGETGTTFKNEGYEGRIEARHRPLGPLNGVVGAQFANSRFS
ALGEEAFVPHTETDSAALFALEEWKLSDRLDLSFGARLEHTRVDPDAKGNERFAENDGSQSFTTGSLSTGAV
YKLTPIWSLAATLSYTERAPTFYELYANGPHAATGTYEVGDADADKEKAVSTDLALRFDNGVHRGSVGVFYS
RFSNYIGLLASGRHRNEEGEVVAASDDEALPEYLYSGVRADFYGVEAQDRIHLLESPYGNFDLELSGDYTRA
KNKDTGEPLPRIAPLRLNTALIWELQQWQARVDVEHAASQHRVPEEELSTDGYTTLGASLGYNFDLGESRWL
AFVKGTNLTNQTVRYASSILRDRVPAAGRGIEAGVKVAF*

AnnotationID:312 GeneID:302

AnnotatorUID: danlee

Modification Date/Time: 2004-04-14 18:06:38

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: (6) Outer membrane protein

Synonyms: PA0781

Cell Localization Confidence Code: 2

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1629

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].
       CD-Length = 768 residues,  96.7% aligned
       Score =  135 bits (338), Expect = 5e-32

Genomic Context:

Comment:

ReferenceID:607

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17749

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:302

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

494 PA0781_tr translation of PA0781 687 99.70 99.85 0 3573.0

25163 gb|AAG04170.1|AE004513_2 (AE004513) hypothetical protein PA0781 [Pseudomonas aeruginosa PAO1] 687 99.70 99.85 0 3573.0

25164 gb|AAN67068.1|AE016335_8 (AE016779) TonB-dependent receptor [Pseudomonas putida KT2440] 692 69.07 80.34 17 2539.0

GC ORFID: `43304`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0781`	Glimmer Score:
Start: `147277`	Stop: `145214`
Length: `2064`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0781 translation of PA0781`	Homolog Bit Score `1380.0`
Other Homologs: `t_PA0781 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCCTCTTCCGGCCTTTTCCCTTCCCGTCCGCTCTGGCCTCTCACGCCACTGGCGCTGGCCTGCCTGATC GTTTCGGGGGAAACGCTCGGCGCCGACGGCCGCCCCAGCGAATTGCCCTCCCAGGTGATCACCGCCAACCCG CTGGGCAACGAATCTCCCGCCACGCCCAGCAGCGTGCTCGAAGGCGACGAGCTGACCCTGCGTCAGAAAGGC AGCCTCGGCGAAACCCTCAACGGCCTGCCCGGGGTGTCCTCCACCTACTTCGGACCGGGCGCCAGCCGACCG GTGATCCGCGGCATGGACGGCGACCGCATCCGCCTGCTGCGCAACGGCGTCGGCGCGCTCGACGCCTCGTCG CTGTCCTACGACCACGCGGTGCCGGAAGACCCCAACAGCGTCGAGCGCCTGGAAGTGGTACGCGGCCCGGCC GCCCTGCTCTACGGCGGCAATGCCATCGGCGGGGTGGTGAACAGCTTCGACAACCGCATTCCCAGCGAACCC GTCGACGGCATCCACGGCAGCGGCGAACTGCGCTACGGCGGCGCCGACACCACCCGTAGCCGCTCCGGCGCA CTGGAGGCCGGCGACGGCAACTTCGCCCTGCACGTGGACGCCGCCAGCCGCGAGTTCAACGACGTCAGGATT CCCGGCTACGCCCATTCCAGCCGCCAGCGGCAGATCGACGGCGACACCGGCAAGCATCGGGTGCAGAACAGC GACGGCCGCCAGGACGGCGGCGCCGTCGGTGGCTCCTATCACTGGGAGCACGGTTACGCCGGCCTCTCCTAC AGCGGCTACGACAGCAACTATGGCTCGCCGGCCGAGGACGACGTGCGCCTGAAGATGCAGCAGGACCGCTAC GCCTTCGCCTCCGAGATCCGCGACCTCGAAGGCCCGTTCACCTCGCTGAAGCTGGACGCCGCCTATACCAAG TACGAGCACAAGGAAATCGAGGACGGCGAGACCGGCACCACCTTCAAGAACGAAGGCTACGAAGGCCGCATC GAGGCCCGCCACCGCCCGCTCGGCCCGCTGAACGGGGTGGTCGGCGCGCAGTTCGCCAACAGCCGCTTCTCC GCCCTCGGCGAGGAAGCCTTCGTGCCGCACACGGAAACCGACAGCGCCGCGCTGTTCGCCCTGGAGGAATGG AAGCTCAGCGACCGCCTCGACCTCAGCTTCGGCGCCCGCCTGGAGCACACCCGCGTGGACCCCGACGCCAAG GGCAACGAGCGCTTCGCCGAGAACGACGGTTCGCAGAGCTTCACCACCGGCAGCCTGTCCACCGGCGCGGTG TACAAGCTGACGCCGATCTGGTCGCTGGCCGCCACCCTCAGCTACACCGAGCGCGCACCGACCTTCTACGAG CTGTACGCCAACGGTCCGCACGCCGCCACCGGCACCTACGAGGTAGGCGATGCCGACGCGGACAAGGAAAAG GCGGTCTCCACCGACCTCGCCCTGCGCTTCGACAACGGCGTGCACAGGGGCAGCGTCGGGGTGTTCTACAGC CGCTTCTCCAACTACATCGGCCTGCTCGCCAGCGGTCGCCATCGCAACGAGGAAGGCGAAGTGGTCGCCGCC AGCGACGACGAGGCGCTGCCGGAATACCTCTACAGCGGCGTTCGCGCGGACTTCTACGGCGTCGAGGCGCAG GACCGCATCCACCTGCTGGAAAGCCCGTACGGCAACTTCGACCTGGAACTCTCCGGGGACTACACCCGCGCC AAGAACAAGGACACCGGCGAACCGCTGCCACGCATCGCCCCGCTACGCCTGAACACCGCGCTGATCTGGGAG TTGCAGCAGTGGCAGGCGCGGGTCGACGTCGAACACGCCGCCTCGCAGCACCGCGTGCCGGAGGAAGAACTC TCCACCGACGGCTACACCACCCTCGGCGCCAGCCTCGGCTACAACTTCGACCTCGGCGAGAGCCGCTGGCTG GCCTTCGTCAAGGGCACCAACCTGACCAACCAGACCGTGCGCTACGCCAGTTCGATCCTGCGCGACCGGGTG CCGGCGGCGGGACGCGGCATCGAGGCGGGGGTGAAGGTGGCGTTCTGA