ViewGene
Locus Name:
GeneID:
Location:

GeneID:3019
TrivialName: PA14_21920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21920
PAO1 Ortholog Locus:PA3253
Sequence Length:798
Protein Length:265
Start: 1907863
Stop: 1907066
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06641.1|AE004747_14 (AE004747) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 265/265 (100%), Positives = 265/265 (100%)
Sequence:
ATGTCGCGCGCTGATCGACGTCCTGCCGCGCTCTACCATCGCCTGGTGGTCTGCGCGCTGTTCCTGATCCTG
GTCCTGCCGCTGGCGGCGACCCTGCTCTACTCGCTGGCCACCCAGTGGTCGGCGACCCTGCTGCCGGACGGC
CTGACCCTGAAGTGGTACCTGACGCTGTGGAGCGACCAGCGCTTCCTGCTGGCCTTCGCCCGCTCGCTGCTG
GTCTGCTTCGGCGCCCTGGCGTTCAGCGTGTTGCTGATCCTGCCGCTGATGTTCGTCATCCACTACCACTTC
CCGCGCCTGGACGGCGTGATGAACGTGCTCATCCTGCTGCCCTTCGCGGTGCCGCCGATCGTCTCCTCGGTG
GGCCTGCTGCAACTCTATGCCAGCGGGCCGCTGGAAATGATCGGCACGCCCTGGGTGCTGGTCGGCTGCTAC
TTCACCATCGCCCTGCCGTTCATGTACCGGGCGATCACCAACAACCTGCAGGCGATCAACCTGCGCGACCTG
ATGGACGCCGCCCACCTGCTCGGCGCCAGCACCTGGAAGGCGGCGCTGCTGGTCGTGCTGCCGAACCTGCGC
AAGGGCGTGATGGTGGCCCTGCTGCTGTCGTTCTCCTTCCTCATCGGCGAATTCGTCTTCGCCAACCTGCTG
GTCGGTACCCGCTACGAGACCCTGCAGGTGTTCCTCAACAACATGCGCAACAGCAGCGGCCACTACACCAGC
GCAGTGGTGGTCTCCTACTTCGTGTTCGTCCTGGTCCTGACCTGGGCGGCCAACCGACTGAACAAGGACAAG
GCCTGA
Translation:
MSRADRRPAALYHRLVVCALFLILVLPLAATLLYSLATQWSATLLPDGLTLKWYLTLWSDQRFLLAFARSLL
VCFGALAFSVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASGPLEMIGTPWVLVGCY
FTIALPFMYRAITNNLQAINLRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLL
VGTRYETLQVFLNNMRNSSGHYTSAVVVSYFVFVLVLTWAANRLNKDKA*
AnnotationID:3027GeneID:3019
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:12
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA3253
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1177
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57347.1| (AE016870) polyamine ABC transporter, permease protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 265

 Score =  445 bits (1145), Expect = e-124
 Identities = 213/264 (80%), Positives = 241/264 (91%)

>gb|AAN67344.1|AE016360_10 (AE016780) ABC transporter, permease protein [Pseudomonas putida
           KT2440]
          Length = 264

 Score =  439 bits (1129), Expect = e-123
 Identities = 214/262 (81%), Positives = 236/262 (90%)

>dbj|BAC61694.1| (AP005085) putative permease of ABC transporter [Vibrio
           parahaemolyticus]
          Length = 261

 Score =  346 bits (887), Expect = 9e-95
 Identities = 160/251 (63%), Positives = 211/251 (84%)






 
Structural Features:
COG1177, PotC, ABC-type spermidine/putrescine transport system, 
permease component II [Amino acid transport and metabolism]
CD-Length = 267 residues,  98.5% aligned
Score =  166 bits (422), Expect = 3e-42
Identities = 84/266 (31%), Positives = 132/266 (49%), Gaps = 4/266 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:6041




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23183




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32290




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3019_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3019
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4880
                           PA3253_tr
                           translation of PA3253
                           265
                           99.99
                           99.99
                           0
                           1344.0
     

     
     
138490
                           gb|AAG06641.1|AE004747_14
                           (AE004747) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           265
                           99.99
                           99.99
                           0
                           1344.0
     

     
     
138492
                           gb|AAN67344.1|AE016360_10
                           (AE016780) ABC transporter, permease protein [Pseudomonas putida KT2440]
                           265
                           80.75
                           89.05
                           1
                           1128.0
     

     
     
138491
                           gb|AAO57347.1|
                           (AE016870) polyamine ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           265
                           80.37
                           90.94
                           0
                           1143.0
     

     
     
138493
                           dbj|BAC61694.1|
                           (AP005085) putative permease of ABC transporter [Vibrio parahaemolyticus]
                           265
                           61.13
                           80.75
                           4
                           879.0
     

     






      

          
GC ORFID: 46021How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3253Glimmer Score: 

          
Start: 3046068Stop: 3046865

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3253 translation of PA3253Homolog Bit Score 522.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2679 (ORF: BLASTX 446.0), t_PA3253 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCGCGCTGATCGACGTCCTGCCGCGCTCTACCATCGCCTGGTGGTCTGCGCGCTGTTCCTGATCCTG 
GTCCTGCCGCTGGCGGCGACCCTGCTCTACTCGCTGGCCACCCAGTGGTCGGCGACCCTGCTGCCGGACGGC 
CTGACCCTGAAGTGGTACCTGACGCTGTGGAGCGACCAGCGCTTCCTGCTGGCCTTCGCCCGCTCGCTGCTG 
GTCTGCTTCGGCGCCCTGGCGTTCAGCGTGTTGCTGATCCTGCCGCTGATGTTCGTCATCCACTACCACTTC 
CCGCGCCTGGACGGCGTGATGAACGTGCTCATCCTGCTGCCCTTCGCGGTGCCGCCGATCGTCTCCTCGGTG 
GGCCTGCTGCAACTCTATGCCAGCGGGCCGCTGGAAATGATCGGCACGCCCTGGGTGCTGGTCGGCTGCTAC 
TTCACCATCGCCCTGCCGTTCATGTACCGGGCGATCACCAACAACCTGCAGGCGATCAACCTGCGCGACCTG 
ATGGACGCCGCCCACCTGCTCGGCGCCAGCACCTGGAAGGCGGCGCTGCTGGTCGTGCTGCCGAACCTGCGC 
AAGGGCGTGATGGTGGCCCTGCTGCTGTCGTTCTCCTTCCTCATCGGCGAATTCGTCTTCGCCAACCTGCTG 
GTCGGTACCCGCTACGAGACCCTGCAGGTGTTCCTCAACAACATGCGCAACAGCAGCGGCCACTACACCAGC 
GCAGTGGTGGTCTCCTACTTCGTGTTCGTCCTGGTCCTGACCTGGGCGGCCAACCGACTGAACAAGGACAAG 
GCCTGA