ViewGene
Locus Name:
GeneID:
Location:

GeneID:3018
TrivialName: PA14_28280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28280
PAO1 Ortholog Locus:PA2770
Sequence Length:780
Protein Length:259
Start: 2444914
Stop: 2445693
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06158.1|AE004704_12 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 258/259 (99%), Positives = 258/259 (99%)
Sequence:
ATGGAGCTGACGATCTTCCAGGTCGACGCATTCGCCGACAGTCCCTTCCAGGGCAATCCGGCGGCGGTCTGC
CCCCTCGATGCCTGGCTGGACGACGAGCGCCTGCAGGCCATCGCGGAAGAGAACAATCTTTCGGAAACCGCC
TTTGTCGTCGGCCGCGACGGCGACTATCGATTGCGCTGGTTCACGCCGCAGGTCGAGGTGGACCTGTGCGGC
CATGCGACCCTGGCGACGGCCTGGGTGCTGATCCACAAGCTCGACGACGCTTCCCCGGTACTGCGTTTCGCC
ACCCGCAGCGGCGAGCTGAGCGTACGGCGCGAGGGCGACTCGCTGGCGATGGACTTCCCGGCCAAGCGTCCG
GAACCTTGCGCGACACCGGATGGACTGCTGGAGGCGCTGGGCATTGTCGAGGCGGAAGTGCTGAAGACCGAC
GATTACCTCGTGGTGGTCGACGACGAAAAGACGATCGCTGCCCTGGCGCCTGACTTCGCCCGGCTGAAGGGC
CTGCCGTGCCGCGGGGTGGCGGTGACCGCGCGCAGCCAGCGCTTCGATTTCGTCTCGCGCTGGTTCGGGCCC
AACGTCGGCGTCAACGAAGACCCGGTGACCGGTTCCGCGCATACCTCCCTGGCGCCGTACTGGGCGCAGCGC
CTGGGCAAGACCCGGCTGAGCGCCGAGCAGGGCGGGGCGCGCAAGGGGCGCCTGGAATGCGACGTGCGCGGC
GAGCGGGTGGTCATCTCCGGCAAGGCGGCGTTGTACATGAGCGGTACGCTCCATCTCTGA
Translation:
MELTIFQVDAFADSPFQGNPAAVCPLDAWLDDERLQAIAEENNLSETAFVVGRDGDYRLRWFTPQVEVDLCG
HATLATAWVLIHKLDDASPVLRFATRSGELSVRREGDSLAMDFPAKRPEPCATPDGLLEALGIVEAEVLKTD
DYLVVVDDEKTIAALAPDFARLKGLPCRGVAVTARSQRFDFVSRWFGPNVGVNEDPVTGSAHTSLAPYWAQR
LGKTRLSAEQGGARKGRLECDVRGERVVISGKAALYMSGTLHL*
AnnotationID:3026GeneID:3018
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 20:08:08
Gene Name:
Confidence Code:3
GeneProduct:putative phenazine biosynthesis protein, PhzF family
Cell Localization:()
Synonyms:PA2770
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative epimerase
Functional Category Confidence Code:5
COGs:COG0384,pfam02567
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69895.1|AE016628_8 (AE016790) phenazine biosynthesis protein, PhzF family [Pseudomonas
           putida KT2440]
          Length = 262

 Score =  323 bits (828), Expect = 6e-88
 Identities = 166/262 (63%), Positives = 199/262 (75%), Gaps = 3/262 (1%)

>gb|AAN51287.1|AE011563_3 (AE011563) phenazine biosynthesis protein, PhzF family [Leptospira
           interrogans serovar lai str. 56601]
          Length = 274

 Score =  234 bits (596), Expect = 5e-61
 Identities = 119/260 (45%), Positives = 167/260 (64%), Gaps = 1/260 (0%)






 
Structural Features:
COG0384, Predicted epimerase, PhzC/PhzF homolog.
CD-Length = 291 residues,  99.7% aligned
Score =  242 bits (620), Expect = 3e-65
Identities = 112/290 (38%), Positives = 139/290 (47%), Gaps = 31/290 (10%)

pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein.
CD-Length = 288 residues,  99.0% aligned
Score =  192 bits (489), Expect = 4e-50
Identities = 108/285 (37%), Positives = 141/285 (49%), Gaps = 34/285 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6039




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23181




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36282




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3018_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3018
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4878
                           PA2770_tr
                           translation of PA2770
                           259
                           99.61
                           99.61
                           0
                           1345.0
     

     
     
138467
                           gb|AAG06158.1|AE004704_12
                           (AE004704) hypothetical protein PA2770 [Pseudomonas aeruginosa PAO1]
                           259
                           99.61
                           99.61
                           0
                           1345.0
     

     
     
138468
                           gb|AAN69895.1|AE016628_8
                           (AE016790) phenazine biosynthesis protein, PhzF family [Pseudomonas putida KT2440]
                           262
                           63.35
                           75.95
                           3
                           834.0
     

     
     
4879
                           PA3578_tr
                           translation of PA3578
                           262
                           55.34
                           67.17
                           4
                           680.0
     

     
     
138469
                           gb|AAG06966.1|AE004778_10
                           (AE004778) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           262
                           55.34
                           67.17
                           4
                           680.0
     

     






      

          
GC ORFID: 46020How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2770Glimmer Score: 

          
Start: 2509012Stop: 2508233

          
Length: 780


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2770 translation of PA2770Homolog Bit Score 522.0

          
Other Homologs:  t_PA3578 (ORF: BLASTX 265.0), t_PA2770 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCTGACGATCTTCCAGGTCGACGCATTCGCCGACAGTCCCTTCCAGGGCAATCCGGCGGCGGTCTGC 
CCCCTCGATGCCTGGCTGGACGACGAGCGCCTGCAGGCCATCGCGGAAGAGAACAATCTTTCGGAAACCGCC 
TTTGTCGTCGGCCGCGACGGCGACTATCGATTGCGCTGGTTCACGCCGCAGGTCGAGGTGGACCTGTGCGGC 
CATGCGACCCTGGCGACGGCCTGGGTGCTGATCCACAAGCTCGACGACGCTTCCCCGGTACTGCGTTTCGCC 
ACCCGCAGCGGCGAGCTGAGCGTACGGCGCGAGGGCGACTCGCTGGCGATGGACTTCCCGGCCAAGCGTCCG 
GAACCTTGCGCGACACCGGATGGACTGCTGGAGGCGCTGGGCATTGTCGAGGCGGAAGTGCTGAAGACCGAC 
GATTACCTCGTGGTGGTCGACGACGAAAAGACGATCGCTGCCCTGGCGCCTGACTTCGCCCGGCTGAAGGGC 
CTGCCGTGCCGCGGGGTGGCGGTGACCGCGCGCAGCCAGCGCTTCGATTTCGTCTCGCGCTGGTTCGGGCCC 
AACGTCGGCGTCAACGAAGACCCGGTGACCGGTTCCGCGCATACCTCCCTGGCGCCGTACTGGGCGCAGCGC 
CTGGGCAAGACCCGGCTGAGCGCCGAGCAGGGCGGGGCGCGCAAGGGGCGCCTGGAATGCGACGTGCGCGGC 
GAGCGGGTGGTCATCTCCGGCAAGGCGGCGTTGTACATGAGCGGTACGCTCCATCTCTGA