ViewGene

Locus Name:
GeneID:
Location:

GeneID:3017
TrivialName: PA14_46820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46820
PAO1 Ortholog Locus:PA1350
Sequence Length:750
Protein Length:249
Start: 4170536
Stop: 4169787
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04739.1|AE004564_8 (AE004564) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 248/249 (99%), Positives = 249/249 (100%)
Sequence:
ATGAATCCTTCTTTGCAGGACCACCCGGTGAGCAACCGGGAACAATGGCTGGACGCCCGTCGCCGTCTGCTG
GCGCGGGAAAAGCAACTCACCCGCCTGCGCGACCAGGTCGCCGCCGAACGACGCGAACTGCCCTGGGTCAGG
GTGGACAAGGACTACCGCTTCCAGGGCGAGCGCGGCGAGCGTTCGCTGGCCGAGTTGTTCGGCGGCAATAGC
CAGCTAATCGTCTACCACTTCATGTTCGCGCCGGGCTGGAGCGAAGGCTGCGTCGGCTGTTCGTTCCTCGCC
GACCACATCGACGGCGCCAACCGGCACCTGGCGCACCACGACGTCAGCCTGGTGGCGGTATCGCGCGCGCCC
CTGGAGGAGTTCCAGGCGTTCCGCCGGCGCATGGGCTGGCGTTTCGACTGGTACTCCTCGTACGGCAGCGAT
TTCAACCGTGACTTCGGGGTGTCCTTCGACAAGGCGCAACTGGCCGCCGGCAGCGTCGACTACAACTACCAG
CCGACCCCCGACGCCGGCGAGGAAATGCCGGGTGCCAGCGTGTTCCTGCGCAATCCGGCGGGCGAGGTGTTC
CACACCTATTCGGCCTATGCGCGCGGCCTCGACATCCTGCTCACCACCTACACCTTCCTCGACCTGACGCCC
AAGGGGCGCAACGAGGACGCGATCATGGACTGGCTGCGTCACCACGACCGCTACGACGAGGCGCCGAAAAGC
GCCTGCTGCCACGCGCAGGCCAGCCATTGA
Translation:
MNPSLQDHPVSNREQWLDARRRLLAREKQLTRLRDQVAAERRELPWVRVDKDYRFQGERGERSLAELFGGNS
QLIVYHFMFAPGWSEGCVGCSFLADHIDGANRHLAHHDVSLVAVSRAPLEEFQAFRRRMGWRFDWYSSYGSD
FNRDFGVSFDKAQLAAGSVDYNYQPTPDAGEEMPGASVFLRNPAGEVFHTYSAYARGLDILLTTYTFLDLTP
KGRNEDAIMDWLRHHDRYDEAPKSACCHAQASH*
AnnotationID:3025GeneID:3017
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1350
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:6037
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23179
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37445
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3017_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3017

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4877 PA1350_tr translation of PA1350 249 99.59 99.99 0 1345.0
138454 gb|AAG04739.1|AE004564_8 (AE004564) hypothetical protein PA1350 [Pseudomonas aeruginosa PAO1] 249 99.59 99.99 0 1345.0
138455 gb|AAN68459.1|AE016478_11 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 250 61.20 70.00 9 821.0
138456 emb|CAE30711.1| (BX640437) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 272 55.14 65.07 24 772.0
138457 emb|CAE39950.1| (BX640423) conserved hypothetical protein [Bordetella parapertussis] 272 54.77 64.70 24 768.0
GC ORFID: 46019How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1350Glimmer Score:
Start: 783373Stop: 784122
Length: 750
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1350 translation of PA1350Homolog Bit Score 522.0
Other Homologs: t_PA1350 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCCTTCTTTGCAGGACCACCCGGTGAGCAACCGGGAACAATGGCTGGACGCCCGTCGCCGTCTGCTG
GCGCGGGAAAAGCAACTCACCCGCCTGCGCGACCAGGTCGCCGCCGAACGACGCGAACTGCCCTGGGTCAGG
GTGGACAAGGACTACCGCTTCCAGGGCGAGCGCGGCGAGCGTTCGCTGGCCGAGTTGTTCGGCGGCAATAGC
CAGCTAATCGTCTACCACTTCATGTTCGCGCCGGGCTGGAGCGAAGGCTGCGTCGGCTGTTCGTTCCTCGCC
GACCACATCGACGGCGCCAACCGGCACCTGGCGCACCACGACGTCAGCCTGGTGGCGGTATCGCGCGCGCCC
CTGGAGGAGTTCCAGGCGTTCCGCCGGCGCATGGGCTGGCGTTTCGACTGGTACTCCTCGTACGGCAGCGAT
TTCAACCGTGACTTCGGGGTGTCCTTCGACAAGGCGCAACTGGCCGCCGGCAGCGTCGACTACAACTACCAG
CCGACCCCCGACGCCGGCGAGGAAATGCCGGGTGCCAGCGTGTTCCTGCGCAATCCGGCGGGCGAGGTGTTC
CACACCTATTCGGCCTATGCGCGCGGCCTCGACATCCTGCTCACCACCTACACCTTCCTCGACCTGACGCCC
AAGGGGCGCAACGAGGACGCGATCATGGACTGGCTGCGTCACCACGACCGCTACGACGAGGCGCCGAAAAGC
GCCTGCTGCCACGCGCAGGCCAGCCATTGA