ViewGene

Locus Name:
GeneID:
Location:

GeneID:3016
TrivialName: PA14_02590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02590
PAO1 Ortholog Locus:PA0212
Sequence Length:807
Protein Length:268
Start: 231082
Stop: 231888
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03601.1|AE004459_5 (AE004459) malonate decarboxylase gamma subunit [Pseudomonas aeruginosa PAO1]
Identities = 266/268 (99%), Positives = 267/268 (99%)
Sequence:
ATGAGCCAACCGTTCACTTCCCGTGGCCTGGCCTGGTTCCAGGCGCTGGCCGGTAGCCTCGCGCCGCGTCCC
GGCGATCCTGCTTCGTTGCGCGTCGCCGATGCCGAGCTGGACGGCTACCCGGTGCGTTTCCTGGCCGTCGTG
CCCGATCCCGACAATCCGTTCCCGCGCGCTCGCCAGGGCGAGGTCGGGCTGCTCGAGGGCTGGGGCCTGGCC
GCCGCCGTCGACGAGGCGCTGGAGGCCGACCGCGAGGCGCCGCGCAAGCGCGCGCTGCTGGCCATCGTCGAC
GTGCCGAGCCAGGCCTACGGCCGCCGCGAGGAGGCCCTGGGTATCCACCAGGCGCTGGCCGGGGCGGTGGAT
GCCTACGCCCGCGCCCGACTCGCCGGGCATCCGCTGATCGGCCTGCTGGTGGGCAAGGCGATGTCCGGTGCG
TTCCTCGCCCACGGCTACCAGGCCAACCGCCTGATCGCCTTGCACGATCCGGGGGTGATGGTCCACGCCATG
GGCAAGGCCGCCGCCGCGCGGATCACCCTGCGCAGCGTCGAGGAACTGGAGGCGTTGGCGGCGAAGGTGCCG
CCGATGGCCTACGACATCGACAGCTACGCGTCGCTCGGCCTGCTCTGGAGGACCCTTCCGGTGGAGACCGTC
GAGGTGCCGTCGACGGCGGACCTGGTGCGGGTCCGCACCTGCCTGGGCGAGGCCCTGGCCGATATCCTCGGC
GGCCCGCGCGACCTCGGCGGCCGCCTCGGCGCGGCCAACCGCGAGGCGTCGGCGCAGGTGCGCCGGCTGCTG
CGCGAGCAGTGGTGA
Translation:
MSQPFTSRGLAWFQALAGSLAPRPGDPASLRVADAELDGYPVRFLAVVPDPDNPFPRARQGEVGLLEGWGLA
AAVDEALEADREAPRKRALLAIVDVPSQAYGRREEALGIHQALAGAVDAYARARLAGHPLIGLLVGKAMSGA
FLAHGYQANRLIALHDPGVMVHAMGKAAAARITLRSVEELEALAAKVPPMAYDIDSYASLGLLWRTLPVETV
EVPSTADLVRVRTCLGEALADILGGPRDLGGRLGAANREASAQVRRLLREQW*
AnnotationID:3024GeneID:3016
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:03
Gene Name:mdcE
Confidence Code:2
GeneProduct:malonate decarboxylase gamma subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06833
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58510.1| (AE016874) malonate decarboxylase, gamma subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 266

 Score =  367 bits (943), Expect = e-101
 Identities = 188/263 (71%), Positives = 213/263 (80%)

>dbj|BAA36208.1| (AB017138) gamma subunit of malonate decarboxylase [Pseudomonas
           putida]
          Length = 263

 Score =  362 bits (929), Expect = 1e-99
 Identities = 191/262 (72%), Positives = 211/262 (80%), Gaps = 3/262 (1%)
Structural Features:
pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE). 
CD-Length = 234 residues, 100.0% aligned
Score =  251 bits (643), Expect = 5e-68
Identities = 127/258 (49%), Positives = 146/258 (56%), Gaps = 24/258 (9%)
Genomic Context:
Comment:
ReferenceID:6035
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23177
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33577
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3016_cdd.html
URL:
ReferenceID:35464
Author/Investigator(s): Chohnan S, Kurusu Y, Nishihara H, Takamura Y.
Title: Cloning and characterization of mdc genes encoding malonate decarboxylase from Pseudomonas putida.
PubMed: 10339824
MedLine:
Source:
FEMS Microbiol Lett. 1999 May 15;174(2):311-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10339824
Homologs By Global Alignment
Gene ID:3016

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4876 PA0212_tr translation of PA0212 268 99.25 99.62 0 1348.0
138449 gb|AAG03601.1|AE004459_5 (AE004459) malonate decarboxylase gamma subunit [Pseudomonas aeruginosa PAO1] 268 99.25 99.62 0 1348.0
138450 gb|AAO58510.1| (AE016874) malonate decarboxylase, gamma subunit [Pseudomonas syringae pv. tomato str. DC3000] 268 70.89 80.22 2 941.0
138451 dbj|BAA36208.1| (AB017138) gamma subunit of malonate decarboxylase [Pseudomonas putida] 271 70.47 77.85 11 934.0
138452 gb|AAA99819.1| (U56096) MdcD [Klebsiella pneumoniae] 268 58.95 71.64 2 756.0
GC ORFID: 46018How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0212Glimmer Score:
Start: 6032423Stop: 6033229
Length: 807
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0212 translation of PA0212Homolog Bit Score 523.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3321 (ORF: BLASTX 375.0), t_PA0212 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCAACCGTTCACTTCCCGTGGCCTGGCCTGGTTCCAGGCGCTGGCCGGTAGCCTCGCGCCGCGTCCC
GGCGATCCTGCTTCGTTGCGCGTCGCCGATGCCGAGCTGGACGGCTACCCGGTGCGTTTCCTGGCCGTCGTG
CCCGATCCCGACAATCCGTTCCCGCGCGCTCGCCAGGGCGAGGTCGGGCTGCTCGAGGGCTGGGGCCTGGCC
GCCGCCGTCGACGAGGCGCTGGAGGCCGACCGCGAGGCGCCGCGCAAGCGCGCGCTGCTGGCCATCGTCGAC
GTGCCGAGCCAGGCCTACGGCCGCCGCGAGGAGGCCCTGGGTATCCACCAGGCGCTGGCCGGGGCGGTGGAT
GCCTACGCCCGCGCCCGACTCGCCGGGCATCCGCTGATCGGCCTGCTGGTGGGCAAGGCGATGTCCGGTGCG
TTCCTCGCCCACGGCTACCAGGCCAACCGCCTGATCGCCTTGCACGATCCGGGGGTGATGGTCCACGCCATG
GGCAAGGCCGCCGCCGCGCGGATCACCCTGCGCAGCGTCGAGGAACTGGAGGCGTTGGCGGCGAAGGTGCCG
CCGATGGCCTACGACATCGACAGCTACGCGTCGCTCGGCCTGCTCTGGAGGACCCTTCCGGTGGAGACCGTC
GAGGTGCCGTCGACGGCGGACCTGGTGCGGGTCCGCACCTGCCTGGGCGAGGCCCTGGCCGATATCCTCGGC
GGCCCGCGCGACCTCGGCGGCCGCCTCGGCGCGGCCAACCGCGAGGCGTCGGCGCAGGTGCGCCGGCTGCTG
CGCGAGCAGTGGTGA