ViewGene

Locus Name:
GeneID:
Location:

GeneID:3015
TrivialName: PA14_00440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00440
PAO1 Ortholog Locus:PA0035
Sequence Length:807
Protein Length:268
Start: 37914
Stop: 37108
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03425.1|AE004443_3 (AE004443) tryptophan synthase alpha chain [Pseudomonas aeruginosa PAO1]
Identities = 267/268 (99%), Positives = 268/268 (100%)
Sequence:
ATGAGCCGCCTGCAGACCCGCTTCGCCCAGCTCAAGCAGGAAAACCGCGCCGCCCTGGTGACCTTCGTCACC
GCCGGCGACCCGGACTACGCGTCTTCCCTGGAAATCCTCAAAGGCCTGCCGGCGGCCGGAGCCGACGTGATC
GAACTGGGCATGCCGTTCACCGATCCGATGGCGGACGGCCCGGCCATCCAGTTGGCCAACATCCGCGCCCTC
GACGGCGGCCAGACCCTGGCCAGGACGTTGCAGATGGTCCGCGAATTCCGCAGCGGCGACAGCGAGACACCC
CTGGTGCTGATGGGCTACTTCAACCCGATCCACCACTACGGCGTCGAGCGCTTCATCGCCGAGGCGAAGGAG
GTGGGGGTGGACGGCCTGATCGTGGTCGACCTGCCGCCGGAGCACAACGAAGACCTCTGCCACCCGGCCCAG
GCCGCCGGCCTCGACTTCATCCGCCTGACCACCCCGACCACCGGCGACCAGCGCCTGCCGACGGTGCTCGAA
GGCAGTTCCGGGTTTGTCTACTACGTGTCGGTGGCCGGCGTCACCGGCGCCAACGCGGCGACCCTGGAACAC
GTCGAGGAAGCGGTGGCGCGCCTGCGCCGGCATACCGACTTGCCGATCGGTATCGGCTTCGGCATCCGCAGC
GCCGAACACGCCGCCGCGGTCGCGCGGTTGGCCGACGGCGTGGTGGTCGGCTCGGCGCTGATCGACCGGATC
GCCAAGGCCCGCGACAATGCCCAGGCGGTCAAGGATGTCCTCGCCCTGTGCGGCGAGCTGGCCGAAGGCGTG
CGCAACGCACGCTGA
Translation:
MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRAL
DGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQ
AAGLDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRS
AEHAAAVARLADGVVVGSALIDRIAKARDNAQAVKDVLALCGELAEGVRNAR*
AnnotationID:3023GeneID:3015
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 14:02:26
Gene Name:trpA
Confidence Code:1
GeneProduct:tryptophan synthase alpha chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0159,pfam00290,cd00346
Secondary Functional Category(ies):
EC Number:4.2.1.20
Status:ACTIVE
Pathway:
Homology:
>gb|AAA26013.1| (M95710) tryptophan synthase alpha subunit [Pseudomonas syringae]
          Length = 269

 Score =  431 bits (1107), Expect = e-120
 Identities = 218/267 (81%), Positives = 238/267 (89%)

>gb|AAN65716.1|AE016198_3 (AE016774) tryptophan synthase, alpha subunit [Pseudomonas putida
           KT2440]
          Length = 269

 Score =  401 bits (1031), Expect = e-111
 Identities = 201/268 (75%), Positives = 230/268 (85%)

>gb|AAF61458.1|AF139661_3 (AF139661) tryptophan synthase alpha subunit [Azospirillum
           brasilense]
          Length = 284

 Score =  324 bits (830), Expect = 4e-88
 Identities = 164/270 (60%), Positives = 203/270 (75%), Gaps = 5/270 (1%)

Structural Features:
COG0159, TrpA, Tryptophan synthase alpha chain 
[Amino acid transport and metabolism]
CD-Length = 265 residues, 100.0% aligned
Score =  342 bits (879), Expect = 3e-95
Identities = 140/266 (52%), Positives = 190/266 (71%), Gaps = 1/266 (0%)

pfam00290, Trp_syntA, Tryptophan synthase alpha chain.
CD-Length = 260 residues, 100.0% aligned
Score =  330 bits (847), Expect = 1e-91
Identities = 131/260 (50%), Positives = 177/260 (68%), Gaps = 2/260 (0%)

cd00346, trp_synt_A, Tryptophan synthase alpha chain
CD-Length = 244 residues, 100.0% aligned
Score =  307 bits (789), Expect = 6e-85
Identities = 125/245 (51%), Positives = 165/245 (67%), Gaps = 3/245 (1%)

Genomic Context:
Comment:
ReferenceID:6033
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23175
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33398
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3015_cdd.html
URL:
ReferenceID:35516
Author/Investigator(s): Auerbach S, Gao J, Gussin GN.
Title: Nucleotide sequences of the trpI, trpB, and trpA genes of Pseudomonas syringae: positive control unique to fluorescent pseudomonads.
PubMed: 8423001
MedLine:
Source:
Gene. 1993 Jan 15;123(1):25-32.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8423001
Homologs By Global Alignment
Gene ID:3015

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4875 PA0035_tr translation of PA0035 268 99.62 99.99 0 1348.0
138389 gb|AAG03425.1|AE004443_3 (AE004443) tryptophan synthase alpha chain [Pseudomonas aeruginosa PAO1] 268 99.62 99.99 0 1348.0
138390 gb|AAA88463.1| (M15826) tryptophan synthase alpha subunit [Pseudomonas aeruginosa] 268 99.25 99.62 0 1342.0
138391 gb|AAA26013.1| (M95710) tryptophan synthase alpha subunit [Pseudomonas syringae] 269 81.04 88.47 1 1106.0
138392 emb|CAA31662.1| (X13299) unnamed protein product [Pseudomonas putida] 269 75.83 86.24 1 1042.0
GC ORFID: 46017How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0035Glimmer Score:
Start: 5839251Stop: 5838445
Length: 807
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0035 translation of PA0035Homolog Bit Score 523.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4088 (ORF: BLASTX 399.0), t_PA0035 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCGCCTGCAGACCCGCTTCGCCCAGCTCAAGCAGGAAAACCGCGCCGCCCTGGTGACCTTCGTCACC
GCCGGCGACCCGGACTACGCGTCTTCCCTGGAAATCCTCAAAGGCCTGCCGGCGGCCGGAGCCGACGTGATC
GAACTGGGCATGCCGTTCACCGATCCGATGGCGGACGGCCCGGCCATCCAGTTGGCCAACATCCGCGCCCTC
GACGGCGGCCAGACCCTGGCCAGGACGTTGCAGATGGTCCGCGAATTCCGCAGCGGCGACAGCGAGACACCC
CTGGTGCTGATGGGCTACTTCAACCCGATCCACCACTACGGCGTCGAGCGCTTCATCGCCGAGGCGAAGGAG
GTGGGGGTGGACGGCCTGATCGTGGTCGACCTGCCGCCGGAGCACAACGAAGACCTCTGCCACCCGGCCCAG
GCCGCCGGCCTCGACTTCATCCGCCTGACCACCCCGACCACCGGCGACCAGCGCCTGCCGACGGTGCTCGAA
GGCAGTTCCGGGTTTGTCTACTACGTGTCGGTGGCCGGCGTCACCGGCGCCAACGCGGCGACCCTGGAACAC
GTCGAGGAAGCGGTGGCGCGCCTGCGCCGGCATACCGACTTGCCGATCGGTATCGGCTTCGGCATCCGCAGC
GCCGAACACGCCGCCGCGGTCGCGCGGTTGGCCGACGGCGTGGTGGTCGGCTCGGCGCTGATCGACCGGATC
GCCAAGGCCCGCGACAATGCCCAGGCGGTCAAGGATGTCCTCGCCCTGTGCGGCGAGCTGGCCGAAGGCGTG
CGCAACGCACGCTGA