ViewGene
Locus Name:
GeneID:
Location:

GeneID:3014
TrivialName: PA14_00060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00060
PAO1 Ortholog Locus:PA0005
Sequence Length:774
Protein Length:257
Start: 7791
Stop: 7018
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03395.1|AE004440_5 (AE004440) probable acyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 257/257 (100%), Positives = 257/257 (100%)
Sequence:
ATGTCGACAGTGCAGGCCATCAGAACCGTCCTCTTTTACCTGCTGCTGTCCGCCAGCGCGTTCGTCTGGGGC
ACCCTCAGCTTCTTCATCGCGCCGATCCTGCCGTTCCGCGCCCGCTACCGCTTCGTGGTACAGAACTGGTGC
CGCTTCGCGATCTGGCTGACCCGCGTGGTCGCCGGCATCCGCTACGAGGTGCGCGGACTGGAGAACATCCCG
GAAAAGCCCTGCGTGATCCTCTCCAAGCACCAGAGCACCTGGGAAACCTTCTTCCTCTCCGGCTTCTTCGAG
CCACTCAGCCAGGTACTAAAGCGCGAGCTGCTCTACGTGCCGTTCTTCGGCTGGGCCCTGGCCCTGCTCAAG
CCCATCGCCATCGACCGCAGCCAGCCGAAGCTGGCCCTCAAGCAACTGGCCAAGCAGGGCGACGAGTGCCTG
AAGAAAGGCGCCTGGGTGCTGATCTTCCCGGAAGGCACGCGTATTCCGGTGGGGCAGATGGGCAAGTTCTCC
CGCGGCGGCACCGCCTTGGCGGTCAACGCCGGGCTACCGGTACTGCCGATCGCCCACAACGCCGGGCAGTAT
TGGCCCAAGGCCGGCTGGGCCAAGTACCCGGGTACCATCCAGGTGGTGATCGGCCCGGCGATGCACGCCGAA
GGCGAAGGCCCGCGCGCCATCGCCGAGCTAAACCAGCGCGCCGAAGCCTGGGTCAGCGAGACCATGGCCGAG
ATCAGCCCCATCCAGCAGCGGGTCAGCCATCCGGAGCCGTCGGTGGTCTCGTGA
Translation:
MSTVQAIRTVLFYLLLSASAFVWGTLSFFIAPILPFRARYRFVVQNWCRFAIWLTRVVAGIRYEVRGLENIP
EKPCVILSKHQSTWETFFLSGFFEPLSQVLKRELLYVPFFGWALALLKPIAIDRSQPKLALKQLAKQGDECL
KKGAWVLIFPEGTRIPVGQMGKFSRGGTALAVNAGLPVLPIAHNAGQYWPKAGWAKYPGTIQVVIGPAMHAE
GEGPRAIAELNQRAEAWVSETMAEISPIQQRVSHPEPSVVS*
AnnotationID:3022GeneID:3014
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 10:10:26
Gene Name:
Confidence Code:3
GeneProduct:putative acyltransferase
Cell Localization:()
Synonyms:PA0005
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
Functional Category Confidence Code:5
COGs:COG0204
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53741.1| (AE016856) hdtS protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 256

 Score =  368 bits (944), Expect = e-101
 Identities = 173/250 (69%), Positives = 203/250 (81%), Gaps = 1/250 (0%)

>gb|AAG30826.1|AF286536_3 (AF286536) putative N-acylhomoserine lactone synthase [Pseudomonas
           fluorescens]
          Length = 259

 Score =  362 bits (929), Expect = 1e-99
 Identities = 169/251 (67%), Positives = 201/251 (80%)

>gb|AAN65692.1|AE016196_3 (AE016774) 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
           [Pseudomonas putida KT2440]
          Length = 261

 Score =  343 bits (881), Expect = 4e-94
 Identities = 162/252 (64%), Positives = 194/252 (76%)






 
Structural Features:
COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase 
[Lipid metabolism]
CD-Length = 255 residues,  92.2% aligned
Score =  133 bits (334), Expect = 3e-32
Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 10/240 (4%)









   
Genomic Context:






   
Comment:


















    ReferenceID:6031




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23173




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33370




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3014_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3014
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4874
                           PA0005_tr
                           translation of PA0005
                           257
                           99.99
                           99.99
                           0
                           1348.0
     

     
     
138376
                           gb|AAG03395.1|AE004440_5
                           (AE004440) probable acyltransferase [Pseudomonas aeruginosa PAO1]
                           257
                           99.99
                           99.99
                           0
                           1348.0
     

     
     
138377
                           gb|AAO53741.1|
                           (AE016856) hdtS protein [Pseudomonas syringae pv. tomato str. DC3000]
                           259
                           67.18
                           79.53
                           5
                           942.0
     

     
     
138378
                           gb|AAG30826.1|AF286536_3
                           (AF286536) putative N-acylhomoserine lactone synthase [Pseudomonas fluorescens]
                           264
                           64.39
                           76.89
                           12
                           928.0
     

     
     
138379
                           gb|AAN65692.1|AE016196_3
                           (AE016774) 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative [Pseudomonas putida KT2440]
                           262
                           61.83
                           74.42
                           6
                           881.0
     

     






      

          
GC ORFID: 46016How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0005Glimmer Score: 

          
Start: 5809128Stop: 5808355

          
Length: 774


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0005 translation of PA0005Homolog Bit Score 523.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4106 (ORF: BLASTX 370.0), t_PA0005 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGACAGTGCAGGCCATCAGAACCGTCCTCTTTTACCTGCTGCTGTCCGCCAGCGCGTTCGTCTGGGGC 
ACCCTCAGCTTCTTCATCGCGCCGATCCTGCCGTTCCGCGCCCGCTACCGCTTCGTGGTACAGAACTGGTGC 
CGCTTCGCGATCTGGCTGACCCGCGTGGTCGCCGGCATCCGCTACGAGGTGCGCGGACTGGAGAACATCCCG 
GAAAAGCCCTGCGTGATCCTCTCCAAGCACCAGAGCACCTGGGAAACCTTCTTCCTCTCCGGCTTCTTCGAG 
CCACTCAGCCAGGTACTAAAGCGCGAGCTGCTCTACGTGCCGTTCTTCGGCTGGGCCCTGGCCCTGCTCAAG 
CCCATCGCCATCGACCGCAGCCAGCCGAAGCTGGCCCTCAAGCAACTGGCCAAGCAGGGCGACGAGTGCCTG 
AAGAAAGGCGCCTGGGTGCTGATCTTCCCGGAAGGCACGCGTATTCCGGTGGGGCAGATGGGCAAGTTCTCC 
CGCGGCGGCACCGCCTTGGCGGTCAACGCCGGGCTACCGGTACTGCCGATCGCCCACAACGCCGGGCAGTAT 
TGGCCCAAGGCCGGCTGGGCCAAGTACCCGGGTACCATCCAGGTGGTGATCGGCCCGGCGATGCACGCCGAA 
GGCGAAGGCCCGCGCGCCATCGCCGAGCTAAACCAGCGCGCCGAAGCCTGGGTCAGCGAGACCATGGCCGAG 
ATCAGCCCCATCCAGCAGCGGGTCAGCCATCCGGAGCCGTCGGTGGTCTCGTGA