ViewGene
Locus Name:
GeneID:
Location:

GeneID:3013
TrivialName: PA14_64540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64540
PAO1 Ortholog Locus:PA4882
Sequence Length:768
Protein Length:255
Start: 5750382
Stop: 5749615
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08267.1|AE004901_9 (AE004901) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 254/255 (99%), Positives = 254/255 (99%)
Sequence:
ATGAAGGGGCCGGAGAAGAAGCGCGCGAAGATCGCGATCGACCCGTCCAGCGAGCGACAGATGGTCGATTTG
CAACGCCGCCTGCTGTTGCGCGGCGGCCTGTCCCTGGGCGCCCTGGCGATGCTCTCGGGGTGCCGGCTACAG
GATGGCGATTCGGTCGACAAGGTACTCTGGGCCATGTCGCGCTGGAACGACCGGGTCCAGGCCTGGCTGTTC
AGCCGTACGCGGCTGGCGCCGACCTTCGATCCGTCGCAGGTGGTCTCGCCGTTCCCCTTCAACGCGTTCTAC
CCGGCCTACAACGTGCCGGAGATCGACCTGCCGGAATACCGCCTGCAGGTTTCCGGGCGGGTCCGCGACAAG
CGCCCCTGGAGCCTGGAGCAACTGCGCCGGCTGCCGCAGGCCAGCCAGGTCACGCAACTGATCTGCATCGAG
GGCTGGAGCGCGATCGGCCAGTGGAGCGGAGTGCCGCTGCGCACCTTCCTGGAGCTGGTCGGCGCCGACACC
TCGGCGAAGTACGTCGGCTTCAAGTGCGCCGACCGCTACTACTCCAGCCTCGACATGCCCAGCGCGCTGCAT
CCGCAGACCCTGCTGGCGCTGGAGATGTCCGGGCAGGCGCTGCCGGAGGAGAACGGCTACCCGCTGCGCCTG
CGGATTCCCACCAAGCTCGGCTTCAAGAACGCCAAGCACGTGGTGGAGATCTTCGTCAGCAACAGCAATCCC
GGAGGTTACTGGGAGGACCAGGGCTACAACTGGTTCAGCGGAGTCTGA
Translation:
MKGPEKKRAKIAIDPSSERQMVDLQRRLLLRGGLSLGALAMLSGCRLQDGDSVDKVLWAMSRWNDRVQAWLF
SRTRLAPTFDPSQVVSPFPFNAFYPAYNVPEIDLPEYRLQVSGRVRDKRPWSLEQLRRLPQASQVTQLICIE
GWSAIGQWSGVPLRTFLELVGADTSAKYVGFKCADRYYSSLDMPSALHPQTLLALEMSGQALPEENGYPLRL
RIPTKLGFKNAKHVVEIFVSNSNPGGYWEDQGYNWFSGV*
AnnotationID:3021GeneID:3013
AnnotatorUID: diggins
Modification Date/Time: 2006-01-16 21:09:50
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, molybdopterin-binding
Cell Localization:()
Synonyms:PA4882
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2041
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57074.1| (AE016868) oxidoreductase, molybdopterin-binding [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 215

 Score =  366 bits (939), Expect = e-101
 Identities = 162/215 (75%), Positives = 191/215 (88%)








 
Structural Features:
COG2041, COG2041, Sulfite oxidase and related enzymes
CD-Length = 271 residues,  89.7% aligned
Score =  201 bits (512), Expect = 8e-53
Identities = 88/244 (36%), Positives = 118/244 (48%), Gaps = 13/244 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6029




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23171




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35171




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3013_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3013
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4873
                           PA4882_tr
                           translation of PA4882
                           255
                           99.60
                           99.60
                           0
                           1346.0
     

     
     
138368
                           gb|AAG08267.1|AE004901_9
                           (AE004901) hypothetical protein PA4882 [Pseudomonas aeruginosa PAO1]
                           255
                           99.60
                           99.60
                           0
                           1346.0
     

     
     
138369
                           gb|AAO57074.1|
                           (AE016868) oxidoreductase, molybdopterin-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           255
                           63.52
                           74.90
                           40
                           939.0
     

     
     
138370
                           emb|CAD14150.1|
                           (AL646060) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           259
                           54.44
                           69.49
                           6
                           755.0
     

     
     
138372
                           emb|CAE25668.1|
                           (BX572593) similar to eukaryotic molybdopterin oxidoreductase:Tat pathway signal [Rhodopseudomonas palustris]
                           263
                           50.19
                           68.44
                           12
                           714.0
     

     






      

          
GC ORFID: 46015How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4882Glimmer Score: 

          
Start: 5014063Stop: 5013296

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4882 translation of PA4882Homolog Bit Score 523.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene7981 (ORF: BLASTX 403.0), t_PA4882 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGGGCCGGAGAAGAAGCGCGCGAAGATCGCGATCGACCCGTCCAGCGAGCGACAGATGGTCGATTTG 
CAACGCCGCCTGCTGTTGCGCGGCGGCCTGTCCCTGGGCGCCCTGGCGATGCTCTCGGGGTGCCGGCTACAG 
GATGGCGATTCGGTCGACAAGGTACTCTGGGCCATGTCGCGCTGGAACGACCGGGTCCAGGCCTGGCTGTTC 
AGCCGTACGCGGCTGGCGCCGACCTTCGATCCGTCGCAGGTGGTCTCGCCGTTCCCCTTCAACGCGTTCTAC 
CCGGCCTACAACGTGCCGGAGATCGACCTGCCGGAATACCGCCTGCAGGTTTCCGGGCGGGTCCGCGACAAG 
CGCCCCTGGAGCCTGGAGCAACTGCGCCGGCTGCCGCAGGCCAGCCAGGTCACGCAACTGATCTGCATCGAG 
GGCTGGAGCGCGATCGGCCAGTGGAGCGGAGTGCCGCTGCGCACCTTCCTGGAGCTGGTCGGCGCCGACACC 
TCGGCGAAGTACGTCGGCTTCAAGTGCGCCGACCGCTACTACTCCAGCCTCGACATGCCCAGCGCGCTGCAT 
CCGCAGACCCTGCTGGCGCTGGAGATGTCCGGGCAGGCGCTGCCGGAGGAGAACGGCTACCCGCTGCGCCTG 
CGGATTCCCACCAAGCTCGGCTTCAAGAACGCCAAGCACGTGGTGGAGATCTTCGTCAGCAACAGCAATCCC 
GGAGGTTACTGGGAGGACCAGGGCTACAACTGGTTCAGCGGAGTCTGA