ViewGene
Locus Name:
GeneID:
Location:

GeneID:3011
TrivialName: PA14_22020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22020
PAO1 Ortholog Locus:PA3244
Sequence Length:816
Protein Length:271
Start: 1915611
Stop: 1914796
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06632.1|AE004747_5 (AE004747) cell division inhibitor MinD [Pseudomonas aeruginosa PAO1]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
TTGGCCAAAATTCTCGTAGTCACTTCCGGTAAGGGTGGCGTCGGTAAAACCACCACCAGCGCAGCTATCGGC
ACCGGCCTGGCCTTGCGCGGTTTCAAGACCGTCATCGTCGACTTCGACGTCGGCCTGCGTAACCTCGACCTG
ATCATGGGCTGCGAACGCCGCGTGGTGTACGACTTCGTCAACGTCGTCAACGGCGAGGCCACCCTCACCCAG
GCCCTGATCAAGGACAAGCGCCTCGAGAACCTGCATGTCCTGGCCGCCAGCCAGACCCGCGACAAGGACGCC
CTGACCAAGGAAGGCGTCGAGAAAGTCATGGCCGAGCTGCGCAAGGACTTCGAATACATCATCTGCGACTCC
CCGGCGGGCATCGAGAAAGGCGCCCACCTGGCCATGTACTTCGCCGACGAAGCGATCGTCGTGACCAACCCC
GAGGTTTCCTCGGTACGCGACTCCGACCGCATGCTCGGCCTGCTGGCAAGCAAGTCGCAGCGCGCCGAGAAA
GGCGAGGAGCCGATCAAGGAACACCTGCTGCTGACCCGCTACAACCCGGAGCGCGTCACCAAGGGCGAGATG
CTCGGCGTCGACGACGTCGAGGAAATCCTCGCCATCCGCCTGCTCGGGGTGATCCCGGAATCCCAGGCCGTG
CTCAAGGCGTCGAACCAGGGCGTGCCGGTGATCCTCGACGAGCAGAGCGACGCCGGCCAGGCGTACAGCGAT
GCGGTCGACCGCCTGCTCGGCAAGGAAATACCGCATCGATTCCTCGATGTGCAGAAGAAAGGATTCCTGCAA
AGACTGTTCGGAGGACGTGAATGA
Translation:
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGFKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEATLTQ
ALIKDKRLENLHVLAASQTRDKDALTKEGVEKVMAELRKDFEYIICDSPAGIEKGAHLAMYFADEAIVVTNP
EVSSVRDSDRMLGLLASKSQRAEKGEEPIKEHLLLTRYNPERVTKGEMLGVDDVEEILAIRLLGVIPESQAV
LKASNQGVPVILDEQSDAGQAYSDAVDRLLGKEIPHRFLDVQKKGFLQRLFGGRE*
AnnotationID:3019GeneID:3011
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:55
Gene Name:minD
Confidence Code:2
GeneProduct:cell division inhibitor MinD
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:septum site-determining protein MinD
Functional Category Confidence Code:5
COGs:COG2894
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57340.1| (AE016870) septum site-determining protein MinD [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 270

 Score =  472 bits (1215), Expect = e-133
 Identities = 241/269 (89%), Positives = 257/269 (95%)

>gb|AAL20730.1| (AE008780) cell division inhibitor [Salmonella typhimurium LT2]
          Length = 270

 Score =  408 bits (1048), Expect = e-113
 Identities = 204/270 (75%), Positives = 240/270 (88%), Gaps = 1/270 (0%)

>gb|AAN80087.1|AE016759_361 (AE016759) Septum site-determining protein minD [Escherichia coli
           CFT073]
          Length = 270

 Score =  407 bits (1046), Expect = e-113
 Identities = 202/270 (74%), Positives = 243/270 (90%), Gaps = 1/270 (0%)






 
Structural Features:
COG2894, MinD, Septum formation inhibitor-activating ATPase 
[Cell division and chromosome partitioning]
CD-Length = 272 residues,  99.6% aligned
Score =  433 bits (1115), Expect = 1e-122
Identities = 196/272 (72%), Positives = 227/272 (83%), Gaps = 2/272 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14719




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32298




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3011_cdd.html


    		




 
URL:

















    ReferenceID:33984




  
Author/Investigator(s):
        Akerlund T, Gullbrand B, Nordstrom K.





  
Title:
        Effects of the Min system on nucleoid segregation in Escherichia coli.




  
PubMed:
        12368455


MedLine:
        




    
Source:
Microbiology. 2002 Oct;148(Pt 10):3213-22.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12368455









           
Homologs By Global Alignment 

           

       



     
Gene ID:3011
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4871
                           PA3244_tr
                           translation of PA3244
                           271
                           99.99
                           99.99
                           0
                           1347.0
     

     
     
138272
                           gb|AAG06632.1|AE004747_5
                           (AE004747) cell division inhibitor MinD [Pseudomonas aeruginosa PAO1]
                           271
                           99.63
                           99.99
                           0
                           1345.0
     

     
     
138273
                           gb|AAO57340.1|
                           (AE016870) septum site-determining protein MinD [Pseudomonas syringae pv. tomato str. DC3000]
                           271
                           88.56
                           94.83
                           1
                           1212.0
     

     
     
138274
                           gb|AAN67353.1|AE016361_7
                           (AE016780) septum site-determining protein MinD [Pseudomonas putida KT2440]
                           271
                           87.08
                           94.83
                           1
                           1201.0
     

     
     
138276
                           gb|AAN55607.1|AE015699_5
                           (AE015699) septum site-determining protein MinD [Shewanella oneidensis MR-1]
                           271
                           75.27
                           88.19
                           2
                           1044.0
     

     






      

          
GC ORFID: 46013How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3244Glimmer Score: 

          
Start: 3038320Stop: 3039135

          
Length: 816


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3244 translation of PA3244Homolog Bit Score 523.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2670 (ORF: BLASTX 469.0), t_PA3244 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGGCCAAAATTCTCGTAGTCACTTCCGGTAAGGGTGGCGTCGGTAAAACCACCACCAGCGCAGCTATCGGC 
ACCGGCCTGGCCTTGCGCGGTTTCAAGACCGTCATCGTCGACTTCGACGTCGGCCTGCGTAACCTCGACCTG 
ATCATGGGCTGCGAACGCCGCGTGGTGTACGACTTCGTCAACGTCGTCAACGGCGAGGCCACCCTCACCCAG 
GCCCTGATCAAGGACAAGCGCCTCGAGAACCTGCATGTCCTGGCCGCCAGCCAGACCCGCGACAAGGACGCC 
CTGACCAAGGAAGGCGTCGAGAAAGTCATGGCCGAGCTGCGCAAGGACTTCGAATACATCATCTGCGACTCC 
CCGGCGGGCATCGAGAAAGGCGCCCACCTGGCCATGTACTTCGCCGACGAAGCGATCGTCGTGACCAACCCC 
GAGGTTTCCTCGGTACGCGACTCCGACCGCATGCTCGGCCTGCTGGCAAGCAAGTCGCAGCGCGCCGAGAAA 
GGCGAGGAGCCGATCAAGGAACACCTGCTGCTGACCCGCTACAACCCGGAGCGCGTCACCAAGGGCGAGATG 
CTCGGCGTCGACGACGTCGAGGAAATCCTCGCCATCCGCCTGCTCGGGGTGATCCCGGAATCCCAGGCCGTG 
CTCAAGGCGTCGAACCAGGGCGTGCCGGTGATCCTCGACGAGCAGAGCGACGCCGGCCAGGCGTACAGCGAT 
GCGGTCGACCGCCTGCTCGGCAAGGAAATACCGCATCGATTCCTCGATGTGCAGAAGAAAGGATTCCTGCAA 
AGACTGTTCGGAGGACGTGAATGA