ViewGene
Locus Name:
GeneID:
Location:

GeneID:3010
TrivialName: PA14_27390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27390
PAO1 Ortholog Locus:PA2839
Sequence Length:771
Protein Length:256
Start: 2376635
Stop: 2375865
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06227.1|AE004710_9 (AE004710) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 253/256 (98%), Positives = 253/256 (98%)
Sequence:
ATGCTACCGACTCTCTATATTTCCCACGGCTCACCGATGCTCGCCCTCGAACCGGGCGCCAGCGGCGTACAA
CTGCGCCGCCTGGCTACAGAGCTGCCGCGGCCGAAGGCGATCCTGGTGGTTTCCGCGCACTGGGAAAGCGAC
GACCTGCGAGTAACCGGCGCCGCGGCGCCGGATATCTGGCACGACTTCTACGGCTTTCCGCCGCCCCTCTAC
GCCGTGCGCTACCCGGCCAAGGGCGCGCCGGCGCTGGCGCAGCGGACGATCGAACTGCTCCAGGCCGCCGGC
CTGCCGGCCCAGGCCGACCCACAGCGACCATTCGACCACGGCACCTGGGTGCCGCTGAGCCTGATGTACCCG
CAGGCGGACATCCCGGTGCTCCAGCTGTCCCTGCCGAGCCGCCTCGGTCCGGCCCTGCAGAGCCGCGTCGGC
CAGGCCCTGCGCCAACTGCGCGGGGAAGGCGTGCTGCTGATCGGTTCCGGCAGCATCACCCACAACCTGGGC
GAACTGGACTGGCACGCCGGACCGGAAGCCATCGCGCCCTGGGCGCGGGAGTTCCGTGACTGGATGGTGGAA
AAGCTCCAGGCCGACGACGAGGCCGCGCTTCACGACTACCGCCGGCAGGCGCCCTGGGCGGCGCGCAACCAC
CCCAGCGACGAGCACCTGCTGCCGCTGTTCTTCGCCCGCGGCGCGGGCGGCGGCGGGATGCGCGTCGAGCAC
AGCGGCTTTACCCTGGGCTCGTTGGGGATGGATATCTATCGCTTCGATTGA
Translation:
MLPTLYISHGSPMLALEPGASGVQLRRLATELPRPKAILVVSAHWESDDLRVTGAAAPDIWHDFYGFPPPLY
AVRYPAKGAPALAQRTIELLQAAGLPAQADPQRPFDHGTWVPLSLMYPQADIPVLQLSLPSRLGPALQSRVG
QALRQLRGEGVLLIGSGSITHNLGELDWHAGPEAIAPWAREFRDWMVEKLQADDEAALHDYRRQAPWAARNH
PSDEHLLPLFFARGAGGGGMRVEHSGFTLGSLGMDIYRFD*
AnnotationID:3018GeneID:3010
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 18:06:08
Gene Name:
Confidence Code:3
GeneProduct:putative dioxygenase
Cell Localization:()
Synonyms:PA2839
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02900
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam02900, LigB, Catalytic LigB subunit of aromatic ring-opening dioxygenase
CD-Length = 270 residues, 100.0% aligned
Score =  225 bits (575), Expect = 3e-60
Identities = 119/272 (43%), Positives = 152/272 (55%), Gaps = 20/272 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6023




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23165




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36184




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3010_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3010
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4870
                           PA2839_tr
                           translation of PA2839
                           256
                           98.82
                           98.82
                           0
                           1346.0
     

     
     
138241
                           gb|AAG06227.1|AE004710_9
                           (AE004710) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           256
                           98.82
                           98.82
                           0
                           1346.0
     

     
     
138242
                           gb|AAN67488.1|AE016375_6
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           265
                           71.32
                           79.62
                           10
                           999.0
     

     
     
138243
                           gb|AAO55296.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           256
                           66.40
                           80.07
                           1
                           921.0
     

     
     
138244
                           gb|AAM42936.1|
                           (AE012487) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           273
                           56.04
                           64.83
                           18
                           748.0
     

     






      

          
GC ORFID: 46012How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2839Glimmer Score: 

          
Start: 2577292Stop: 2578062

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2839 translation of PA2839Homolog Bit Score 523.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7668 (ORF: BLASTX 369.0), psyr_15may02_Scaffold7_revised_gene7183 (ORF: BLASTX 227.0), t_PA2839 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTACCGACTCTCTATATTTCCCACGGCTCACCGATGCTCGCCCTCGAACCGGGCGCCAGCGGCGTACAA 
CTGCGCCGCCTGGCTACAGAGCTGCCGCGGCCGAAGGCGATCCTGGTGGTTTCCGCGCACTGGGAAAGCGAC 
GACCTGCGAGTAACCGGCGCCGCGGCGCCGGATATCTGGCACGACTTCTACGGCTTTCCGCCGCCCCTCTAC 
GCCGTGCGCTACCCGGCCAAGGGCGCGCCGGCGCTGGCGCAGCGGACGATCGAACTGCTCCAGGCCGCCGGC 
CTGCCGGCCCAGGCCGACCCACAGCGACCATTCGACCACGGCACCTGGGTGCCGCTGAGCCTGATGTACCCG 
CAGGCGGACATCCCGGTGCTCCAGCTGTCCCTGCCGAGCCGCCTCGGTCCGGCCCTGCAGAGCCGCGTCGGC 
CAGGCCCTGCGCCAACTGCGCGGGGAAGGCGTGCTGCTGATCGGTTCCGGCAGCATCACCCACAACCTGGGC 
GAACTGGACTGGCACGCCGGACCGGAAGCCATCGCGCCCTGGGCGCGGGAGTTCCGTGACTGGATGGTGGAA 
AAGCTCCAGGCCGACGACGAGGCCGCGCTTCACGACTACCGCCGGCAGGCGCCCTGGGCGGCGCGCAACCAC 
CCCAGCGACGAGCACCTGCTGCCGCTGTTCTTCGCCCGCGGCGCGGGCGGCGGCGGGATGCGCGTCGAGCAC 
AGCGGCTTTACCCTGGGCTCGTTGGGGATGGATATCTATCGCTTCGATTGA