ViewGene
Locus Name:
GeneID:
Location:

GeneID:3009
TrivialName: PA14_27360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27360
PAO1 Ortholog Locus:PA2841
Sequence Length:792
Protein Length:263
Start: 2373484
Stop: 2372693
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06229.1|AE004711_1 (AE004711) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 261/263 (99%), Positives = 263/263 (100%)
Sequence:
ATGAACGACACCCTCCCAGGACGCATCAGCCGCGAACGGCGCGGCCACCTGCTGCTGCTCGGCCTCGACCGC
GTGGCCAAGCGCAACGCCTTCGACCTGCCGATGCTCGACGACCTGGTCGCCGCGCTCGGCGAATACGAGGCC
GACGACAAGTTGCGCTGTGCCCTGCTCTTCGCCCACGGCGAGCATTTCACCGCCGGGCTGGACCTGGCCAAT
GTCGGCGAGACCTTCCGCCAGGGCTGGAAACTCCCCGAAGGCGCCGTCGATCCCTGGGGCACCTTCGGCGGC
CGGCGTCCAAGCAAGCCGCTGGTGGTGGCCGTGCAAGGCTACTGCTACACCATCGGCATCGAACTGATGCTG
GCGGCCGACATCAACCTCTGCGCCAGCAACGCGCGCTTCGCCCAGCTCGAAGTGCAGCGCGGAATCCTCCCG
TTCGGTGGCGCGACACTGCGCATGCACCAGGTCGCCGGCTGGGGCAACGCCATGCGCTGGCTGCTCACCGGC
GACGAATTCGACGCCCACGAAGCCTATCGTCTCGGCCTGGTGCAGGAAGTCACCGCCCCGGAAGACCTCCTC
GACCACGCCGTCGCTCTCGCCGAACGGGTCGCGGCCCAGGCGCCGCTCGGCGTGCGCGCCACCCTCGGCTCG
GCGCGCCAGGCCCTGCTGGAAGGCGAAGCGGTCGCCGCCGCTGCGTTGCCGGAAGCCGCCAGGCGCCTGCTC
GACAGCGAGGACGCCAAGGAAGGCCTGCGCGCGCTCCAGGAACGCCGCCCGGGACGCTTCGAAGGACGCTAG
Translation:
MNDTLPGRISRERRGHLLLLGLDRVAKRNAFDLPMLDDLVAALGEYEADDKLRCALLFAHGEHFTAGLDLAN
VGETFRQGWKLPEGAVDPWGTFGGRRPSKPLVVAVQGYCYTIGIELMLAADINLCASNARFAQLEVQRGILP
FGGATLRMHQVAGWGNAMRWLLTGDEFDAHEAYRLGLVQEVTAPEDLLDHAVALAERVAAQAPLGVRATLGS
ARQALLEGEAVAAAALPEAARRLLDSEDAKEGLRALQERRPGRFEGR*
AnnotationID:3017GeneID:3009
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 18:06:16
Gene Name:
Confidence Code:3
GeneProduct:putative enoyl-CoA hydratase
Cell Localization:()
Synonyms:PA2841
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative carnithine racemase
Functional Category Confidence Code:5
COGs:COG1024,pfam00378
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
CD-Length = 257 residues,  97.3% aligned
Score =  171 bits (434), Expect = 8e-44
Identities = 99/251 (39%), Positives = 129/251 (51%), Gaps = 2/251 (0%)

pfam00378, ECH, Enoyl-CoA hydratase/isomerase family.
CD-Length = 168 residues,  98.2% aligned
Score = 99.1 bits (247), Expect = 4e-22
Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 2/167 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6021




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23163




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36216




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3009_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3009
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4868
                           PA2841_tr
                           translation of PA2841
                           263
                           99.23
                           99.99
                           0
                           1348.0
     

     
     
138237
                           gb|AAG06229.1|AE004711_1
                           (AE004711) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           263
                           99.23
                           99.99
                           0
                           1348.0
     

     
     
4869
                           PA1240_tr
                           translation of PA1240
                           266
                           54.51
                           69.54
                           4
                           696.0
     

     
     
138238
                           gb|AAG04629.1|AE004553_6
                           (AE004553) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           266
                           54.51
                           69.54
                           4
                           696.0
     

     
     
138239
                           emb|CAE31621.1|
                           (BX640440) putative enoyl-CoA hydratase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           265
                           43.77
                           56.60
                           5
                           505.0
     

     






      

          
GC ORFID: 46011How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2841Glimmer Score: 

          
Start: 2580443Stop: 2581234

          
Length: 792


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2841 translation of PA2841Homolog Bit Score 523.0

          
Other Homologs:  t_PA1240 (ORF: BLASTX 273.0), t_PA2841 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACACCCTCCCAGGACGCATCAGCCGCGAACGGCGCGGCCACCTGCTGCTGCTCGGCCTCGACCGC 
GTGGCCAAGCGCAACGCCTTCGACCTGCCGATGCTCGACGACCTGGTCGCCGCGCTCGGCGAATACGAGGCC 
GACGACAAGTTGCGCTGTGCCCTGCTCTTCGCCCACGGCGAGCATTTCACCGCCGGGCTGGACCTGGCCAAT 
GTCGGCGAGACCTTCCGCCAGGGCTGGAAACTCCCCGAAGGCGCCGTCGATCCCTGGGGCACCTTCGGCGGC 
CGGCGTCCAAGCAAGCCGCTGGTGGTGGCCGTGCAAGGCTACTGCTACACCATCGGCATCGAACTGATGCTG 
GCGGCCGACATCAACCTCTGCGCCAGCAACGCGCGCTTCGCCCAGCTCGAAGTGCAGCGCGGAATCCTCCCG 
TTCGGTGGCGCGACACTGCGCATGCACCAGGTCGCCGGCTGGGGCAACGCCATGCGCTGGCTGCTCACCGGC 
GACGAATTCGACGCCCACGAAGCCTATCGTCTCGGCCTGGTGCAGGAAGTCACCGCCCCGGAAGACCTCCTC 
GACCACGCCGTCGCTCTCGCCGAACGGGTCGCGGCCCAGGCGCCGCTCGGCGTGCGCGCCACCCTCGGCTCG 
GCGCGCCAGGCCCTGCTGGAAGGCGAAGCGGTCGCCGCCGCTGCGTTGCCGGAAGCCGCCAGGCGCCTGCTC 
GACAGCGAGGACGCCAAGGAAGGCCTGCGCGCGCTCCAGGAACGCCGCCCGGGACGCTTCGAAGGACGCTAG