ViewGene
Locus Name:
GeneID:
Location:

GeneID:3008
TrivialName: PA14_20700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20700
PAO1 Ortholog Locus:PA3353
Sequence Length:792
Protein Length:263
Start: 1783554
Stop: 1782763
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06741.1|AE004757_10 (AE004757) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 263/263 (100%), Positives = 263/263 (100%)
Sequence:
GTGCTATCATTGAGGCATTCGTGCCCCAGGAGAGCATTGAAGGTGCCCAACCCGTTCGTCGAAGAAGCGGGG
CCGCAACCCCCGAAGGTGCTCAAGGCCCCCGTGGAAATCCAGGCCAACCTGCGCCTGCTGCAGGATAGCCGC
GACTCCCTGCTGATCACCTTTGCCGATCGCAACCAGCGCTTCCAGAGCTTCCTGGTGGACATCGACCGCGAC
CGCGGGATGGTCGCGCTGGACGAACTCATCCCCAACACCGGCGAACGTTTCCTGCAGAACGGCGAGGCGTTT
CGCGTCGAAGCCTTCCACGAAGGCGTGCGTATCGCCTGGGAATGCGAGCGCCCGGTGCAGTTCGGCGAACAC
GACGGCGTCCCCTGCTACTGGGCCGCCCTTCCCGCCGAAGTGCTCTACCACCAGCGCCGCAACGCCTACCGC
GCCAGCATCAAGCAGAGCCAGCCGATCGCCGCGGAAATCGCCGGGGAGAAACTCCGCGCGCCGCTGAGCGGA
CAACTGCTGGATATCTCCGCCACCGGCGCCAAGCTGCGCTTCGCCGGCAATGTCGCCGAACGCCTGCATCCC
GGCGAGATCTACGAAGACTTCAGCGCCCAGTTGCCACAGGGCGCGATCAGCAGCGCGATCGAACTGCGTCAC
GTGCGCTTCGACGAAAAGCTCGACGCGACCTTCGCCGGCGTCCGCTTCAGCGAGATGAGCGGCCTCGCCCAG
CGCCAGGTGGATCGCTTCGTCTACCAGTTGCAACGCGAAGCCCGGCGCTTCGAGAAAGACGAACTGTTCTGA
Translation:
MLSLRHSCPRRALKVPNPFVEEAGPQPPKVLKAPVEIQANLRLLQDSRDSLLITFADRNQRFQSFLVDIDRD
RGMVALDELIPNTGERFLQNGEAFRVEAFHEGVRIAWECERPVQFGEHDGVPCYWAALPAEVLYHQRRNAYR
ASIKQSQPIAAEIAGEKLRAPLSGQLLDISATGAKLRFAGNVAERLHPGEIYEDFSAQLPQGAISSAIELRH
VRFDEKLDATFAGVRFSEMSGLAQRQVDRFVYQLQREARRFEKDELF*
AnnotationID:3016GeneID:3008
AnnotatorUID: diggins
Modification Date/Time: 2005-04-17 17:05:23
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyltransferase
Cell Localization:()
Synonyms:PA3353
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG558
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5581, Predicted glycosyltransferase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 233 residues,  97.9% aligned
Score =  235 bits (602), Expect = 3e-63
Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 5/231 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14717




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23161




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32201




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3008_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3008
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4867
                           PA3353_tr
                           translation of PA3353
                           263
                           99.99
                           99.99
                           0
                           1350.0
     

     
     
138234
                           gb|AAG06741.1|AE004757_10
                           (AE004757) hypothetical protein PA3353 [Pseudomonas aeruginosa PAO1]
                           263
                           99.61
                           99.99
                           0
                           1347.0
     

     
     
138235
                           gb|AAO55441.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           263
                           54.75
                           72.62
                           15
                           763.0
     

     
     
138236
                           gb|AAN69975.1|AE016635_11
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           265
                           52.07
                           68.30
                           20
                           729.0
     

     






      

          
GC ORFID: 46010How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3353Glimmer Score: 

          
Start: 3170378Stop: 3171169

          
Length: 792


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3353 translation of PA3353Homolog Bit Score 524.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7562 (ORF: BLASTX 297.0), t_PA3353 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTATCATTGAGGCATTCGTGCCCCAGGAGAGCATTGAAGGTGCCCAACCCGTTCGTCGAAGAAGCGGGG 
CCGCAACCCCCGAAGGTGCTCAAGGCCCCCGTGGAAATCCAGGCCAACCTGCGCCTGCTGCAGGATAGCCGC 
GACTCCCTGCTGATCACCTTTGCCGATCGCAACCAGCGCTTCCAGAGCTTCCTGGTGGACATCGACCGCGAC 
CGCGGGATGGTCGCGCTGGACGAACTCATCCCCAACACCGGCGAACGTTTCCTGCAGAACGGCGAGGCGTTT 
CGCGTCGAAGCCTTCCACGAAGGCGTGCGTATCGCCTGGGAATGCGAGCGCCCGGTGCAGTTCGGCGAACAC 
GACGGCGTCCCCTGCTACTGGGCCGCCCTTCCCGCCGAAGTGCTCTACCACCAGCGCCGCAACGCCTACCGC 
GCCAGCATCAAGCAGAGCCAGCCGATCGCCGCGGAAATCGCCGGGGAGAAACTCCGCGCGCCGCTGAGCGGA 
CAACTGCTGGATATCTCCGCCACCGGCGCCAAGCTGCGCTTCGCCGGCAATGTCGCCGAACGCCTGCATCCC 
GGCGAGATCTACGAAGACTTCAGCGCCCAGTTGCCACAGGGCGCGATCAGCAGCGCGATCGAACTGCGTCAC 
GTGCGCTTCGACGAAAAGCTCGACGCGACCTTCGCCGGCGTCCGCTTCAGCGAGATGAGCGGCCTCGCCCAG 
CGCCAGGTGGATCGCTTCGTCTACCAGTTGCAACGCGAAGCCCGGCGCTTCGAGAAAGACGAACTGTTCTGA