ViewGene
Locus Name:
GeneID:
Location:

GeneID:3007
TrivialName: PA14_27020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27020
PAO1 Ortholog Locus:PA2866
Sequence Length:804
Protein Length:267
Start: 2350715
Stop: 2349912
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06254.1|AE004713_3 (AE004713) secretion protein MttC [Pseudomonas aeruginosa PAO1]
Identities = 262/267 (98%), Positives = 263/267 (98%)
Sequence:
ATGCAACTCATCGATATCGGCGTCAATCTGACCCACGCCAGCTTCGCCCTGGAACGTGAAGCACTGCTCGCC
CGCGCGCGCGCCGCCGGGGTGGTGCAGATGGTGATCACCGGCACCAGCCTGGCCGACAGCGAACAGGCGCTG
CAGCTCTGCGGCGAACTCGACGAGGGCGGCCGGCTGTTTACCACCGCCGGCGTCCACCCCCACGAGGCCAGC
CACTGGAACGGCGACACCGCTCGCGGCCTGCGCGCCCTGTTCGACGACCAGCGGGTACGCGCGGTGGGCGAA
TGCGGTCTCGACTTCAATCGCGACTTCTCTCCCCGTCCGGCCCAGGAAAAGGCTCTGGAGGAACAACTGGCA
CTGGCCGTCGAGCTACAGCGTCCGGTGTTCCTCCACGAACGCGACGCCAGCGAGCGCCTGCTGGCGATCCTG
CGCGACTTCCGCGATCGCCTGCCGGCCGCCGTCGTACACTGTTTCACCGGCGAGCGCCGGGCGCTGTATGGC
TACCTCGACCTCGACCTGCACATCGGCATCACCGGCTGGATCAACGACGAGCGCCGCGGCACCCACCTGCAT
GATCTGGTAAGCGAGATCCCGGTCGGCCGTCTCATGCTGGAAAGCGACGCGCCCTACCTGCTGCCGCGCAGC
CTGCGGCCGAAGCCGAAGAACGGGCGCAACGAGCCAGCCTACCTGGTCGAGGTGCTCGACTGCGTGGCCCGC
CATCGCGGCGAGAGCGCGGAGCGCCTGGCCGCTCACACCAGCGCCGCGGCGCGGGCGTTCTTCGGCCTGCCG
ACGATCGACTGA
Translation:
MQLIDIGVNLTHASFALEREALLARARAAGVVQMVITGTSLADSEQALQLCGELDEGGRLFTTAGVHPHEAS
HWNGDTARGLRALFDDQRVRAVGECGLDFNRDFSPRPAQEKALEEQLALAVELQRPVFLHERDASERLLAIL
RDFRDRLPAAVVHCFTGERRALYGYLDLDLHIGITGWINDERRGTHLHDLVSEIPVGRLMLESDAPYLLPRS
LRPKPKNGRNEPAYLVEVLDCVARHRGESAERLAAHTSAAARAFFGLPTID*
AnnotationID:3015GeneID:3007
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:11
Gene Name:mttC
Confidence Code:2
GeneProduct:secretion protein MttC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:hydrolase, TatD family
Functional Category Confidence Code:5
COGs:cd01310,COG0084,pfam01026
Secondary Functional Category(ies):DNA replication, recombination, and repair
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55770.1| (AE016863) hydrolase, TatD family [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 278

 Score =  405 bits (1040), Expect = e-112
 Identities = 206/267 (77%), Positives = 224/267 (83%), Gaps = 1/267 (0%)

>gb|AAM39618.1| (AE012126) type V secretory pathway protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 268

 Score =  292 bits (748), Expect = 1e-78
 Identities = 152/264 (57%), Positives = 187/264 (70%), Gaps = 2/264 (0%)

>gb|AAO28743.1| (AE012556) type V secretory pathway protein [Xylella fastidiosa
           Temecula1]
          Length = 268

 Score =  270 bits (691), Expect = 5e-72
 Identities = 143/264 (54%), Positives = 177/264 (67%), Gaps = 2/264 (0%)








 
Structural Features:
cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein
CD-Length = 251 residues, 100.0% aligned
Score =  235 bits (600), Expect = 5e-63

COG0084, TatD, Mg-dependent DNase 
[DNA replication, recombination, and repair]
CD-Length = 256 residues, 100.0% aligned
Score =  243 bits (623), Expect = 1e-65
Identities = 102/265 (38%), Positives = 146/265 (55%), Gaps = 11/265 (4%)

pfam01026, TatD_DNase, TatD related DNase.
CD-Length = 250 residues, 100.0% aligned
Score =  211 bits (538), Expect = 7e-56
Identities = 102/265 (38%), Positives = 146/265 (55%), Gaps = 11/265 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6017




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36205




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3007_cdd.html


    		




 
URL:

















    ReferenceID:36409




  
Author/Investigator(s):
        Weiner JH, Bilous PT, Shaw GM, Lubitz SP, Frost L, Thomas GH, Cole JA, Turner RJ.





  
Title:
        A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins.




  
PubMed:
        9546395


MedLine:
        




    
Source:
Cell. 1998 Apr 3;93(1):93-101.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=98206471&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:3007
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4866
                           PA2866_tr
                           translation of PA2866
                           267
                           98.12
                           98.50
                           0
                           1349.0
     

     
     
138212
                           gb|AAG06254.1|AE004713_3
                           (AE004713) secretion protein MttC [Pseudomonas aeruginosa PAO1]
                           267
                           98.12
                           98.50
                           0
                           1349.0
     

     
     
138213
                           gb|AAO55770.1|
                           (AE016863) hydrolase, TatD family [Pseudomonas syringae pv. tomato str. DC3000]
                           278
                           74.10
                           80.57
                           11
                           1042.0
     

     
     
138214
                           gb|AAN67924.1|AE016425_1
                           (AE016782) hydrolase, TatD family [Pseudomonas putida KT2440]
                           268
                           73.13
                           81.34
                           4
                           989.0
     

     
     
138215
                           gb|AAM39618.1|
                           (AE012126) type V secretory pathway protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           270
                           56.29
                           69.25
                           5
                           745.0
     

     






      

          
GC ORFID: 46009How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2866Glimmer Score: 

          
Start: 2603211Stop: 2604014

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2866 translation of PA2866Homolog Bit Score 524.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene391 (ORF: BLASTX 399.0), t_PA2866 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACTCATCGATATCGGCGTCAATCTGACCCACGCCAGCTTCGCCCTGGAACGTGAAGCACTGCTCGCC 
CGCGCGCGCGCCGCCGGGGTGGTGCAGATGGTGATCACCGGCACCAGCCTGGCCGACAGCGAACAGGCGCTG 
CAGCTCTGCGGCGAACTCGACGAGGGCGGCCGGCTGTTTACCACCGCCGGCGTCCACCCCCACGAGGCCAGC 
CACTGGAACGGCGACACCGCTCGCGGCCTGCGCGCCCTGTTCGACGACCAGCGGGTACGCGCGGTGGGCGAA 
TGCGGTCTCGACTTCAATCGCGACTTCTCTCCCCGTCCGGCCCAGGAAAAGGCTCTGGAGGAACAACTGGCA 
CTGGCCGTCGAGCTACAGCGTCCGGTGTTCCTCCACGAACGCGACGCCAGCGAGCGCCTGCTGGCGATCCTG 
CGCGACTTCCGCGATCGCCTGCCGGCCGCCGTCGTACACTGTTTCACCGGCGAGCGCCGGGCGCTGTATGGC 
TACCTCGACCTCGACCTGCACATCGGCATCACCGGCTGGATCAACGACGAGCGCCGCGGCACCCACCTGCAT 
GATCTGGTAAGCGAGATCCCGGTCGGCCGTCTCATGCTGGAAAGCGACGCGCCCTACCTGCTGCCGCGCAGC 
CTGCGGCCGAAGCCGAAGAACGGGCGCAACGAGCCAGCCTACCTGGTCGAGGTGCTCGACTGCGTGGCCCGC 
CATCGCGGCGAGAGCGCGGAGCGCCTGGCCGCTCACACCAGCGCCGCGGCGCGGGCGTTCTTCGGCCTGCCG 
ACGATCGACTGA