ViewGene

Locus Name:
GeneID:
Location:

GeneID:3006
TrivialName: PA14_36200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36200
PAO1 Ortholog Locus:PA2204
Sequence Length:807
Protein Length:268
Start: 3225300
Stop: 3226106
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05592.1|AE004647_1 (AE004647) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 266/268 (99%), Positives = 267/268 (99%)
Sequence:
ATGAAGAAACTCCCCGCCATCACCGCCCTCGCCCTCGCCCTGATCTCCGGCCTGGCCCAGGCCGACCGCCTG
GAGGACATCCGCAAGGCCGGCGTATTGCGCGTCGCGTCCTTCGACAGCAACCCGCCGTTCGGCTTCGTCGAC
GCCAAGAGCAAGCAGATCGAAGGCCTCGACGTCGACTATGCCAAGGCCCTGGCCGACAAGCTGGGCGTCCGG
CTGCAAGTGCTGCCGACCAACCCGGCCAACCGCATCCCGCTGCTGACGGCGAACAAGGTCGACCTGGTCCTG
GCCAACTTCACCATCACCCGGGAGCGTGCGCAGCAGGTGGACTTCAGCATCCCCTACTTCTCCTCCGGCCAG
CAGTTCATCGTCAAGAAAGGCACCCTGACCTCGCCGGAAGTCCTCAACAAGTGGCGGGTCGGCGTGGACAAG
GGCACGGTCAACGAAGGCGTGCTGCGCGAGAAGTTCCCCGGCGCCAAGGTCATCGCCTACGACGACACGCCC
TTCGCTTTCACCGCCCTGCGCAACGGCCAGGTCCAGGCCATCACCCAGGACGGTCCGAAGCTGATCGGCCTG
CTGGCCAACGTGCCCGACCGCGACAAGTACGAAGTGCCGCCCTTCACCATTTCCAACGACCTGATCGGCGTC
GGTATTCCCAAGGGCGAGAAGTCCCTGACCGAGTTCGTCGACAAGAGCCTGCGCGAGCTGGAGCAGGACGGT
CAGGCGCAGAAGATCTACGACACCTGGTTCGGTCCGCAGACCAAGACCCCGCTGGCGCGCCTGTACAAGATC
GGCGACAAGAGCTGA
Translation:
MKKLPAITALALALISGLAQADRLEDIRKAGVLRVASFDSNPPFGFVDAKSKQIEGLDVDYAKALADKLGVR
LQVLPTNPANRIPLLTANKVDLVLANFTITRERAQQVDFSIPYFSSGQQFIVKKGTLTSPEVLNKWRVGVDK
GTVNEGVLREKFPGAKVIAYDDTPFAFTALRNGQVQAITQDGPKLIGLLANVPDRDKYEVPPFTISNDLIGV
GIPKGEKSLTEFVDKSLRELEQDGQAQKIYDTWFGPQTKTPLARLYKIGDKS*
AnnotationID:3014GeneID:3006
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 14:02:15
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA2204
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00497,smart00062,cd00134,COG0834
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAM87667.1|AE014014_1 (AE014014) putative solute-binding periplasmic protein precursor
           for ABC transporter [Yersinia pestis KIM]
          Length = 284

 Score =  309 bits (792), Expect = 9e-84
 Identities = 153/262 (58%), Positives = 203/262 (77%), Gaps = 3/262 (1%)

Structural Features:
pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.
CD-Length = 224 residues,  99.6% aligned
Score =  178 bits (452), Expect = 8e-46
Identities = 88/224 (39%), Positives = 130/224 (58%), Gaps = 6/224 (2%)

smart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  99.5% aligned
Score =  176 bits (448), Expect = 2e-45
Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

cd00134, PBPb, Bacterial periplasmic transport system
CD-Length = 218 residues, 100.0% aligned
Score =  159 bits (402), Expect = 5e-40
Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 2/219 (0%)

COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  97.8% aligned
Score =  160 bits (405), Expect = 2e-40
Identities = 105/269 (39%), Positives = 147/269 (54%), Gaps = 10/269 (3%)
Genomic Context:
Comment:
ReferenceID:6015
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23157
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32550
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3006_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3006

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4865 PA2204_tr translation of PA2204 268 99.25 99.62 0 1349.0
138206 gb|AAG05592.1|AE004647_1 (AE004647) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1] 268 99.25 99.62 0 1349.0
138207 gb|AAQ58950.1| (AE016914) probable ABC transporter, periplasmic-binding protein [Chromobacterium violaceum ATCC 12472] 284 61.61 75.35 17 905.0
138210 emb|CAE12514.1| (BX571859) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 282 54.25 72.34 18 791.0
138208 gb|AAM87667.1|AE014014_1 (AE014014) putative solute-binding periplasmic protein precursor for ABC transporter [Yersinia pestis KIM] 288 53.47 71.18 24 789.0
GC ORFID: 46008How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2204Glimmer Score:
Start: 1728616Stop: 1727810
Length: 807
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2204 translation of PA2204Homolog Bit Score 524.0
Other Homologs: t_PA2204 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGAAACTCCCCGCCATCACCGCCCTCGCCCTCGCCCTGATCTCCGGCCTGGCCCAGGCCGACCGCCTG
GAGGACATCCGCAAGGCCGGCGTATTGCGCGTCGCGTCCTTCGACAGCAACCCGCCGTTCGGCTTCGTCGAC
GCCAAGAGCAAGCAGATCGAAGGCCTCGACGTCGACTATGCCAAGGCCCTGGCCGACAAGCTGGGCGTCCGG
CTGCAAGTGCTGCCGACCAACCCGGCCAACCGCATCCCGCTGCTGACGGCGAACAAGGTCGACCTGGTCCTG
GCCAACTTCACCATCACCCGGGAGCGTGCGCAGCAGGTGGACTTCAGCATCCCCTACTTCTCCTCCGGCCAG
CAGTTCATCGTCAAGAAAGGCACCCTGACCTCGCCGGAAGTCCTCAACAAGTGGCGGGTCGGCGTGGACAAG
GGCACGGTCAACGAAGGCGTGCTGCGCGAGAAGTTCCCCGGCGCCAAGGTCATCGCCTACGACGACACGCCC
TTCGCTTTCACCGCCCTGCGCAACGGCCAGGTCCAGGCCATCACCCAGGACGGTCCGAAGCTGATCGGCCTG
CTGGCCAACGTGCCCGACCGCGACAAGTACGAAGTGCCGCCCTTCACCATTTCCAACGACCTGATCGGCGTC
GGTATTCCCAAGGGCGAGAAGTCCCTGACCGAGTTCGTCGACAAGAGCCTGCGCGAGCTGGAGCAGGACGGT
CAGGCGCAGAAGATCTACGACACCTGGTTCGGTCCGCAGACCAAGACCCCGCTGGCGCGCCTGTACAAGATC
GGCGACAAGAGCTGA