ViewGene
Locus Name:
GeneID:
Location:

GeneID:3004
TrivialName: PA14_43520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43520
PAO1 Ortholog Locus:PA1624
Sequence Length:807
Protein Length:268
Start: 3876543
Stop: 3875737
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05013.1|AE004590_4 (AE004590) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 266/268 (99%), Positives = 267/268 (99%)
Sequence:
ATGCGAGGGTTCCTGTTGCTATCCCTGGGCGTTTTCAGCTTTTCGGCGCTGGCCGCCGACCTTCCCGGCAGC
CATGACCTGGACGTCCTGCCGCGCTTCCCGCGCGCCGAGATCGTCGACTTCCGCCAGGCGCCGAGCGAGGAG
CGGATCTACCCGCTAGGGGCGATCAGCCGCATCAGCGGTCGCCTGCGCATGGAGGGCGAGGTGCGCGCCGAA
GGCGAGCTGACCGCGCTGACCTACCGCTTGCCGCCCGAGCACAGCAGTCAGGAGGCGTTCGCCGCGGCGCGC
ACTGCGCTGCTCAAGGCCGACGCCACGCCGTTGTTCTGGTGCGAGCGGCGCGACTGCGGCTCCAGCAGCCTG
CTGGCCAACGCCGTGTTCGGCAATGCCAAGCTGTACGGCCCGGACGAGCAGCAGGCCTACCTGCTGGTGCGC
CTGGCGGCGCCACAGGAGAACAGCCTGGTGGCGGTCTACTCGATCACCCGCGGCAATCGCCGCGCCTACCTG
CAGGCCGAGGAACTCAAGGCCGATGCGCCGCTGGGGGAACTGCTGCCGAGCCCGGCGACCCTGCTGCGCCTG
CTCAAGGCCAACGGCGAACTGACCCTCAGCCATGTGCCGGCGGAGCCGGCCGGCTCCTGGCTGGAGTTGCTG
GTGCGGACCCTGCGCCTGGATACCGGTGTGCGGGTCGAGCTGTCCGGCAAGCACGCCCAGGAGTGGCGCGAC
GCCCTGCGCGGGCAGGGCGTGCTGAACAGCCGCATGGAGCTGGGCCAGTCGGAGGTCGAGGGCCTGCACCTC
AACTGGCTGCGTTGA
Translation:
MRGFLLLSLGVFSFSALAADLPGSHDLDVLPRFPRAEIVDFRQAPSEERIYPLGAISRISGRLRMEGEVRAE
GELTALTYRLPPEHSSQEAFAAARTALLKADATPLFWCERRDCGSSSLLANAVFGNAKLYGPDEQQAYLLVR
LAAPQENSLVAVYSITRGNRRAYLQAEELKADAPLGELLPSPATLLRLLKANGELTLSHVPAEPAGSWLELL
VRTLRLDTGVRVELSGKHAQEWRDALRGQGVLNSRMELGQSEVEGLHLNWLR*
AnnotationID:3012GeneID:3004
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 12:12:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1624
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6011




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23153




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3004
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4863
                           PA1624_tr
                           translation of PA1624
                           268
                           99.25
                           99.62
                           0
                           1350.0
     

     
     
138184
                           gb|AAG05013.1|AE004590_4
                           (AE004590) hypothetical protein PA1624 [Pseudomonas aeruginosa PAO1]
                           268
                           99.25
                           99.62
                           0
                           1350.0
     

     
     
138185
                           gb|AAO55736.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           268
                           48.50
                           65.29
                           29
                           669.0
     

     
     
138186
                           gb|AAN69744.1|AE016611_2
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           276
                           45.65
                           66.30
                           20
                           609.0
     

     






      

          
GC ORFID: 46006How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1624Glimmer Score: 

          
Start: 1077366Stop: 1078172

          
Length: 807


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1624 translation of PA1624Homolog Bit Score 524.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1014 (ORF: BLASTX 276.0), t_PA1624 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAGGGTTCCTGTTGCTATCCCTGGGCGTTTTCAGCTTTTCGGCGCTGGCCGCCGACCTTCCCGGCAGC 
CATGACCTGGACGTCCTGCCGCGCTTCCCGCGCGCCGAGATCGTCGACTTCCGCCAGGCGCCGAGCGAGGAG 
CGGATCTACCCGCTAGGGGCGATCAGCCGCATCAGCGGTCGCCTGCGCATGGAGGGCGAGGTGCGCGCCGAA 
GGCGAGCTGACCGCGCTGACCTACCGCTTGCCGCCCGAGCACAGCAGTCAGGAGGCGTTCGCCGCGGCGCGC 
ACTGCGCTGCTCAAGGCCGACGCCACGCCGTTGTTCTGGTGCGAGCGGCGCGACTGCGGCTCCAGCAGCCTG 
CTGGCCAACGCCGTGTTCGGCAATGCCAAGCTGTACGGCCCGGACGAGCAGCAGGCCTACCTGCTGGTGCGC 
CTGGCGGCGCCACAGGAGAACAGCCTGGTGGCGGTCTACTCGATCACCCGCGGCAATCGCCGCGCCTACCTG 
CAGGCCGAGGAACTCAAGGCCGATGCGCCGCTGGGGGAACTGCTGCCGAGCCCGGCGACCCTGCTGCGCCTG 
CTCAAGGCCAACGGCGAACTGACCCTCAGCCATGTGCCGGCGGAGCCGGCCGGCTCCTGGCTGGAGTTGCTG 
GTGCGGACCCTGCGCCTGGATACCGGTGTGCGGGTCGAGCTGTCCGGCAAGCACGCCCAGGAGTGGCGCGAC 
GCCCTGCGCGGGCAGGGCGTGCTGAACAGCCGCATGGAGCTGGGCCAGTCGGAGGTCGAGGGCCTGCACCTC 
AACTGGCTGCGTTGA