ViewGene
Locus Name:
GeneID:
Location:

GeneID:3003
TrivialName: PA14_49330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49330
PAO1 Ortholog Locus:PA1166
Sequence Length:789
Protein Length:262
Start: 4383077
Stop: 4383865
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04555.1|AE004547_1 (AE004547) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 260/262 (99%), Positives = 261/262 (99%)
Sequence:
ATGCGCCTGCTCTGCGCCCTGCTGCTCATCGCCTGCGCCGCCAGCGCCCAGGCCGCTATCCAGACCCGCGAT
ATGCCTTACCGGAGCGCAGACGGCACGCGCATGGTCGGCTATTTCGCCTACGACGACAGCAAGCCGGGGATC
CGCCCTGGGGTCATCGTGGTCCACGAATGGTGGGGGCTCAACGACTATGCCAAGCGCCGCGCCCGCGACCTC
GCCGAACTCGGCTACAGCGCCCTGGCCATCGACATGTACGGCGAAGGCAAGCACACCGAGCACCCGCAGGAC
GCGATGGCCTTCATGCAGGCCGCGACCCGGGATGCCGACGCCGCCAAGGCGCGCTTCCTCGCCGGCCTGGAA
CTGCTGAAGCGGCAACCGCAGACCGATCCCAGCCAGATCGCCGCGATCGGCTACTGCTTCGGCGGCAAGATC
GTCCTCGACATGGCCCGCCAGGGCCTGCCGCTGGCAGGCGTGGCGAGCTTCCACGGCGCCCTCGGCACCGCC
ACCCCGGCCAGCAAGGGCAGCGTCAAGGCGAAGATCCTGGTGGAGCACGGCAGCGCCGACAGCCTGGTCCCG
GCCAAGGACCTCGACGCCCTGAAACAGGAACTGAGCGCCGCCGGCGCCGACTACCGGGTGGTGATCCAGGAC
GGCGCCAAACACGGCTTCACCAACCCCGACGCCGACGCGCACAAGGGCCACGGCCTGGACATCGGCTACGAC
CGCCAGGCCGACCGACGCTCCTGGGCAGACCTGCAGGCGTTCCTCAAGGACATCTTCGGGCAGGGTTGA
Translation:
MRLLCALLLIACAASAQAAIQTRDMPYRSADGTRMVGYFAYDDSKPGIRPGVIVVHEWWGLNDYAKRRARDL
AELGYSALAIDMYGEGKHTEHPQDAMAFMQAATRDADAAKARFLAGLELLKRQPQTDPSQIAAIGYCFGGKI
VLDMARQGLPLAGVASFHGALGTATPASKGSVKAKILVEHGSADSLVPAKDLDALKQELSAAGADYRVVIQD
GAKHGFTNPDADAHKGHGLDIGYDRQADRRSWADLQAFLKDIFGQG*
AnnotationID:3011GeneID:3003
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 16:04:38
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0412, KOG3043
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Similarity to dienelactone hydrolase family protein from Pseudomonas spp. 
and pfam01738, DLH, Dienelactone hydrolase family.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6009




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16981




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.







    
Reference Type:Blast (text/plain)







    
Data:PA1166_CDS.cgi


    		




 
URL:

















    ReferenceID:23151




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3003
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4862
                           PA1166_tr
                           translation of PA1166
                           262
                           99.23
                           99.61
                           0
                           1350.0
     

     
     
138180
                           gb|AAG04555.1|AE004547_1
                           (AE004547) hypothetical protein PA1166 [Pseudomonas aeruginosa PAO1]
                           262
                           99.23
                           99.61
                           0
                           1350.0
     

     
     
138181
                           gb|AAO55197.1|
                           (AE016861) dienelactone hydrolase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           265
                           64.90
                           78.86
                           6
                           895.0
     

     
     
138182
                           gb|AAN66808.1|AE016309_10
                           (AE016778) dienelactone hydrolase family protein [Pseudomonas putida KT2440]
                           267
                           63.67
                           76.02
                           7
                           884.0
     

     
     
138183
                           gb|AAR35909.1|
                           (AE017216) dienelactone hydrolase family protein [Geobacter sulfurreducens PCA]
                           272
                           50.00
                           66.17
                           12
                           695.0
     

     






      

          
GC ORFID: 46005How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1166Glimmer Score: 

          
Start: 570831Stop: 570043

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1166 translation of PA1166Homolog Bit Score 524.0

          
Other Homologs:  t_PA1166 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGCTCTGCGCCCTGCTGCTCATCGCCTGCGCCGCCAGCGCCCAGGCCGCTATCCAGACCCGCGAT 
ATGCCTTACCGGAGCGCAGACGGCACGCGCATGGTCGGCTATTTCGCCTACGACGACAGCAAGCCGGGGATC 
CGCCCTGGGGTCATCGTGGTCCACGAATGGTGGGGGCTCAACGACTATGCCAAGCGCCGCGCCCGCGACCTC 
GCCGAACTCGGCTACAGCGCCCTGGCCATCGACATGTACGGCGAAGGCAAGCACACCGAGCACCCGCAGGAC 
GCGATGGCCTTCATGCAGGCCGCGACCCGGGATGCCGACGCCGCCAAGGCGCGCTTCCTCGCCGGCCTGGAA 
CTGCTGAAGCGGCAACCGCAGACCGATCCCAGCCAGATCGCCGCGATCGGCTACTGCTTCGGCGGCAAGATC 
GTCCTCGACATGGCCCGCCAGGGCCTGCCGCTGGCAGGCGTGGCGAGCTTCCACGGCGCCCTCGGCACCGCC 
ACCCCGGCCAGCAAGGGCAGCGTCAAGGCGAAGATCCTGGTGGAGCACGGCAGCGCCGACAGCCTGGTCCCG 
GCCAAGGACCTCGACGCCCTGAAACAGGAACTGAGCGCCGCCGGCGCCGACTACCGGGTGGTGATCCAGGAC 
GGCGCCAAACACGGCTTCACCAACCCCGACGCCGACGCGCACAAGGGCCACGGCCTGGACATCGGCTACGAC 
CGCCAGGCCGACCGACGCTCCTGGGCAGACCTGCAGGCGTTCCTCAAGGACATCTTCGGGCAGGGTTGA