ViewGene
Locus Name:
GeneID:
Location:

GeneID:3001
TrivialName: PA14_02960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02960
PAO1 Ortholog Locus:PA0238
Sequence Length:816
Protein Length:271
Start: 258505
Stop: 259320
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03627.1|AE004461_10 (AE004461) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
ATGGAATCGAGGATTCTTTCCCTGGCGGCGCTCACCGTGCTCGAGCTGTCGCCCCCGGACATGGTCGAGGCT
GCCGCCCGTGCCGGCTACAGTCATGTCGGCCTGCGCCTGGTGCCGGCCACCGTGGAAGAGCACCACTATCCG
CTGCTGGCCGATGCCGGCCTGCGCCGGCGGACCCTGGCGCGGCTGCGCGACAGCGGAGTGCGCACGCTGGAC
GTGGAGATCCTGCGCCTGCGTCCGGACACCCGCGTCGGCGAGTTCGCCGCGGTGCTGGAGGTCGGCGCCGAG
TTCGGCGCGCGCTATGTGCTGGTGGCCGGCAACGATGACGACGAGCGGCGCAGCGCGGACAATTTCGCCGCG
TTGTGCGACCTGGCGCGGCCGCTCGGCCTCGATCCGCACCTGGAGTTCATGCCCTGGACCGGGATCCGCGAC
CTGCGGCAGGCCGCACGGGTGGTCGAGGCGGCGGCGCGGGACAACGCCGGCCTGTTGCTGGACGCCTTCCAT
TTCGACCGCTCGGCCAGCAGCCTGGAAGACCTGCGGGCGATCCCGCCTGCGCGCCTGGGCTACGCGCAACTC
TGCGATGTCGTCGGGCCGCGTCCGACGTCGATGGACGAAATCCTTCGCCAGGCCCGCGAGGAACGGCGTTTC
CCTGGCGATGGCGGGCTCGATCTGCTGGCGCTGCTGCGCGCCTTGCCGGAGAACCTGCCGCTGAGCCTGGAG
GTGCCCGCGCTGGATCTGCTCGCGCGCGGCGTGGATGGCGCGGAGCGGGCGCGGCTGGCGATCGAGCGGACC
CGGGCGCTGCTCGCCCGCCTGTAG
Translation:
MESRILSLAALTVLELSPPDMVEAAARAGYSHVGLRLVPATVEEHHYPLLADAGLRRRTLARLRDSGVRTLD
VEILRLRPDTRVGEFAAVLEVGAEFGARYVLVAGNDDDERRSADNFAALCDLARPLGLDPHLEFMPWTGIRD
LRQAARVVEAAARDNAGLLLDAFHFDRSASSLEDLRAIPPARLGYAQLCDVVGPRPTSMDEILRQAREERRF
PGDGGLDLLALLRALPENLPLSLEVPALDLLARGVDGAERARLAIERTRALLARL*
AnnotationID:3009GeneID:3001
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0238
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6005




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23147




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33592




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3001_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3001
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4860
                           PA0238_tr
                           translation of PA0238
                           271
                           99.99
                           99.99
                           0
                           1353.0
     

     
     
138117
                           gb|AAG03627.1|AE004461_10
                           (AE004461) hypothetical protein PA0238 [Pseudomonas aeruginosa PAO1]
                           271
                           99.99
                           99.99
                           0
                           1353.0
     

     
     
138118
                           gb|AAN68211.1|AE016454_6
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           271
                           65.68
                           77.85
                           0
                           905.0
     

     
     
138119
                           dbj|BAC48921.1|
                           (AP005948) bll3656 [Bradyrhizobium japonicum USDA 110]
                           278
                           41.36
                           56.83
                           9
                           540.0
     

     
     
138120
                           dbj|BAC52181.1|
                           (AP005960) bll6916 [Bradyrhizobium japonicum USDA 110]
                           293
                           37.20
                           47.44
                           29
                           440.0
     

     






      

          
GC ORFID: 46003How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0238Glimmer Score: 

          
Start: 6059846Stop: 6060661

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0238 translation of PA0238Homolog Bit Score 525.0

          
Other Homologs:  t_PA0238 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAATCGAGGATTCTTTCCCTGGCGGCGCTCACCGTGCTCGAGCTGTCGCCCCCGGACATGGTCGAGGCT 
GCCGCCCGTGCCGGCTACAGTCATGTCGGCCTGCGCCTGGTGCCGGCCACCGTGGAAGAGCACCACTATCCG 
CTGCTGGCCGATGCCGGCCTGCGCCGGCGGACCCTGGCGCGGCTGCGCGACAGCGGAGTGCGCACGCTGGAC 
GTGGAGATCCTGCGCCTGCGTCCGGACACCCGCGTCGGCGAGTTCGCCGCGGTGCTGGAGGTCGGCGCCGAG 
TTCGGCGCGCGCTATGTGCTGGTGGCCGGCAACGATGACGACGAGCGGCGCAGCGCGGACAATTTCGCCGCG 
TTGTGCGACCTGGCGCGGCCGCTCGGCCTCGATCCGCACCTGGAGTTCATGCCCTGGACCGGGATCCGCGAC 
CTGCGGCAGGCCGCACGGGTGGTCGAGGCGGCGGCGCGGGACAACGCCGGCCTGTTGCTGGACGCCTTCCAT 
TTCGACCGCTCGGCCAGCAGCCTGGAAGACCTGCGGGCGATCCCGCCTGCGCGCCTGGGCTACGCGCAACTC 
TGCGATGTCGTCGGGCCGCGTCCGACGTCGATGGACGAAATCCTTCGCCAGGCCCGCGAGGAACGGCGTTTC 
CCTGGCGATGGCGGGCTCGATCTGCTGGCGCTGCTGCGCGCCTTGCCGGAGAACCTGCCGCTGAGCCTGGAG 
GTGCCCGCGCTGGATCTGCTCGCGCGCGGCGTGGATGGCGCGGAGCGGGCGCGGCTGGCGATCGAGCGGACC 
CGGGCGCTGCTCGCCCGCCTGTAG