ViewGene

Locus Name:
GeneID:
Location:

GeneID:300
TrivialName: PA14_37710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37710
PAO1 Ortholog Locus:PA2071
Sequence Length:2109
Protein Length:702
Start: 3361740
Stop: 3359632
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05459.1|AE004634_2 (AE004634) elongation factor G [Pseudomonas aeruginosa PAO1]
Identities = 698/702 (99%), Positives = 699/702 (99%)
Sequence:
ATGGCTCGCACCACTCCCATCGAGCTTTATCGCAACATCGGCATCGTCGCCCACGTCGACGCCGGCAAGACC
ACGACGACCGAGCGGATCCTCTTCTACACCGGCGTCAACCACAAGATGGGCGAGGTCCATGACGGCGCGGCG
ACCATGGACTGGATGGTCCAGGAGCAGGAGCGCGGCATCACCATCACCTCGGCGGCGACCACGGCCTTCTGG
CAGGGCTCGACCAAGCAGTTCCCGCACCGCTATCGCTTCAACATCATCGACACCCCCGGCCACGTCGACTTC
ACCATCGAGGTGGAGCGCTCGCTGCGCGTGCTCGATGGCGCGGTGGTGGTGTTCAGCGGCGCCGACGGGGTC
GAGCCGCAGTCCGAGACGGTCTGGCGCCAGGCCAACAAGTACCATGTGCCGCGCCTGGCCTACGTGAACAAG
ATGGACCGCCAGGGCGCCGATTTCCTCCGCGTGGTCGCGCAGATCAAGCTACGCCTGGGCCATGTCCCGGTG
CCGATCCAGCTGGCGATCGGCGCGGAGGAAAACTTCAGCGGGCAGATCGACCTGGTGAAGATGAAGGCCATC
TACTGGAACGATGACGACCAGGGCACCAGCTACCGCGAGGAGGAGATCCCGGCGGAGTTGCGGGCGCTGGCC
GAGGAGTGGCGGGCGCACATGGTCGAGGCCGCCGCCGAGGCCAACGACGAACTGATGAACAAGTATCTGGAA
GGCGAGGAACTGAGCATCGAGGAGATCAAGGCCGGGCTGCGCCAGCGGACCCTGGCCAACCAGATCGTACCG
GCGGTGCTCGGCTCCTCGTTCAAGAACAAGGGCGTGCCTCTGGTGCTCGACGCGGTGATCGACTATCTCCCG
GCTCCGTCGGAAATCCCGGCGATCAGGGGCACCGACCCGGACGACGAAGAGAAGCACGACGAGCGCCATGCG
GACGACGACGAGCCGTTCTCGGCGCTGGCGTTCAAGATCGCCACCGACCCCTTCGTCGGCACCCTGACCTTC
GCCCGTGTGTATTCCGGGGTGCTGACTTCCGGCGATGCGGTGCTCAACTCGGTGAAAGGCAAGAAGGAGCGG
GTCGGGCGGATGGTGCAGATGCACGCCAACCAGCGCGACGAGATCAAGGAAGTGCGCGCCGGCGACATCGCC
GCGCTGATCGGCATGAAGGACGTGACCACCGGCGACACCCTGTGCGCCATCGACAAGCCGATCATCCTCGAA
CGCATGGACTTCCCCGATCCGGTGATCTCGGTGGCGGTGGAACCGAAGACCAAGGCCGACCAGGAGAAGATG
GGCATCGCCCTGAGCAAGCTGGCCCAGGAAGACCCGTCGTTCCGCGTGAAGACCGACGAGGAGACCGCGCAA
ACCATCATTTCCGGGATGGGCGAGTTGCACCTGGACATCATCGTCGACCGCATGCGCCGCGAGTTCGGCGTC
GAAGCCAATATCGGCAAGCCGCAGGTGGCCTATCGCGAGACCATCCGCAACACCTGCGAGATCGAGGGCAAG
TTCGTCCGCCAGTCCGGCGGCCGCGGCCAGTTCGGCCATTGCTGGATCCGCTTCGCTCCGGCCGACGAGGGG
CAGGAAGGCTTGGAGTTCCACAACGAGGTGGTCGGCGGGGTGATTCCCCGCGAGTTCATCCCGGCGATCCAG
AAGGGCATCGAGGACCAGATGCAGAACGGTGTGCTCGCCGGCTACCCGCTGATCGGCCTGAAGGCGACGGTG
TACGACGGCTCCTACCATGATGTCGACTCCAGCGAGATGGCGTTCAAGATCGCCGCCTCGATGGCCACCAAG
CAACTCTCGCAGAAGGGCGGAGCGGTGCTCCTGGAGCCGGTGATGAAGGTCGAGGTGGTGACCCCGGAGGAC
TACATGGGCGACGTGATGGGCGACCTCAACCGCCGGCGTGGCCTGATCCAGGGCATGGAGGATACCCCGGCG
GGCAAGGTGATCCGTGCCGAGGTCCCGCTGGGCGAAATGTTCGGCTATGCCACCGACGTGCGCTCGATGTCC
CAGGGGCGCGCGAGCTACTCGATGGAGTTCGTCCGCTATGCCGAGGTACCGGCCAGCGTGGCCGAGGCGATC
GTCGCCAGGCAGGGCCGCTGA
Translation:
MARTTPIELYRNIGIVAHVDAGKTTTTERILFYTGVNHKMGEVHDGAATMDWMVQEQERGITITSAATTAFW
QGSTKQFPHRYRFNIIDTPGHVDFTIEVERSLRVLDGAVVVFSGADGVEPQSETVWRQANKYHVPRLAYVNK
MDRQGADFLRVVAQIKLRLGHVPVPIQLAIGAEENFSGQIDLVKMKAIYWNDDDQGTSYREEEIPAELRALA
EEWRAHMVEAAAEANDELMNKYLEGEELSIEEIKAGLRQRTLANQIVPAVLGSSFKNKGVPLVLDAVIDYLP
APSEIPAIRGTDPDDEEKHDERHADDDEPFSALAFKIATDPFVGTLTFARVYSGVLTSGDAVLNSVKGKKER
VGRMVQMHANQRDEIKEVRAGDIAALIGMKDVTTGDTLCAIDKPIILERMDFPDPVISVAVEPKTKADQEKM
GIALSKLAQEDPSFRVKTDEETAQTIISGMGELHLDIIVDRMRREFGVEANIGKPQVAYRETIRNTCEIEGK
FVRQSGGRGQFGHCWIRFAPADEGQEGLEFHNEVVGGVIPREFIPAIQKGIEDQMQNGVLAGYPLIGLKATV
YDGSYHDVDSSEMAFKIAASMATKQLSQKGGAVLLEPVMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTPA
GKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFVRYAEVPASVAEAIVARQGR*
AnnotationID:310GeneID:300
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:36
Gene Name:fusA2
Confidence Code:2
GeneProduct:translation elongation factor G
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:GTP-binding protein chain elongation factor
Functional Category Confidence Code:5
COGs:COG0480
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69695.1|AE016605_5 (AE016789) translation elongation factor G [Pseudomonas putida
           KT2440]
          Length = 703

 Score = 1263 bits (3268), Expect = 0.0
 Identities = 625/699 (89%), Positives = 667/699 (95%)

>gb|AAF93534.1| (AE004124) elongation factor G [Vibrio cholerae]
          Length = 698

 Score = 1026 bits (2652), Expect = 0.0
 Identities = 514/702 (73%), Positives = 597/702 (85%), Gaps = 5/702 (0%)

>gb|AAN82550.1|AE016767_310 (AE016767) Elongation factor G [Escherichia coli CFT073]
          Length = 704

 Score =  973 bits (2514), Expect = 0.0
 Identities = 487/706 (68%), Positives = 584/706 (82%), Gaps = 6/706 (0%)

Structural Features:
COG0480, FusA, Translation elongation factors (GTPases) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 697 residues,  99.4% aligned
Score = 1006 bits (2603), Expect = 0.0
Identities = 464/704 (65%), Positives = 560/704 (79%), Gaps = 13/704 (1%)
Genomic Context:
Comment:
ReferenceID:603
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17745
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34414
Author/Investigator(s): Besier S, Ludwig A, Brade V, Wichelhaus TA.
Title: Molecular analysis of fusidic acid resistance in Staphylococcus aureus.
PubMed: 12519196
MedLine:
Source:
Mol Microbiol. 2003 Jan;47(2):463-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12519196
ReferenceID:34415
Author/Investigator(s): Cabezon T, Gijsegem FV, Toussaint A, Faelen M, Bollen A.
Title: Phage Mu-1 mediated transposition: a tool to study the organization of ribosomal protein genes in Escherichia coli.
PubMed: 353516
MedLine:
Source:
Mol Gen Genet. 1978 May 31;161(3):291-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=353516
ReferenceID:38059
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:300_cdd.html
URL:
Homologs By Global Alignment
Gene ID:300

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
490 PA2071_tr translation of PA2071 702 99.43 99.57 0 3579.0
24930 gb|AAG05459.1|AE004634_2 (AE004634) elongation factor G [Pseudomonas aeruginosa PAO1] 702 99.43 99.57 0 3579.0
24931 gb|AAN69695.1|AE016605_5 (AE016789) translation elongation factor G [Pseudomonas putida KT2440] 703 89.04 95.16 1 3265.0
24932 gb|AAG07654.1|AE004842_3 (AE004842) elongation factor G [Pseudomonas aeruginosa PAO1] 708 84.46 91.66 8 3088.0
491 PA4266_tr translation of PA4266 708 84.32 91.66 8 3084.0
GC ORFID: 43302How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2071Glimmer Score:
Start: 1592174Stop: 1594282
Length: 2109
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2071 translation of PA2071Homolog Bit Score 1383.0
Other Homologs: t_PA4266 (ORF: BLASTX 1189.0), psyr_15may02_Scaffold4_revised_gene5181 (ORF: BLASTX 1171.0), t_PA2071 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTCGCACCACTCCCATCGAGCTTTATCGCAACATCGGCATCGTCGCCCACGTCGACGCCGGCAAGACC
ACGACGACCGAGCGGATCCTCTTCTACACCGGCGTCAACCACAAGATGGGCGAGGTCCATGACGGCGCGGCG
ACCATGGACTGGATGGTCCAGGAGCAGGAGCGCGGCATCACCATCACCTCGGCGGCGACCACGGCCTTCTGG
CAGGGCTCGACCAAGCAGTTCCCGCACCGCTATCGCTTCAACATCATCGACACCCCCGGCCACGTCGACTTC
ACCATCGAGGTGGAGCGCTCGCTGCGCGTGCTCGATGGCGCGGTGGTGGTGTTCAGCGGCGCCGACGGGGTC
GAGCCGCAGTCCGAGACGGTCTGGCGCCAGGCCAACAAGTACCATGTGCCGCGCCTGGCCTACGTGAACAAG
ATGGACCGCCAGGGCGCCGATTTCCTCCGCGTGGTCGCGCAGATCAAGCTACGCCTGGGCCATGTCCCGGTG
CCGATCCAGCTGGCGATCGGCGCGGAGGAAAACTTCAGCGGGCAGATCGACCTGGTGAAGATGAAGGCCATC
TACTGGAACGATGACGACCAGGGCACCAGCTACCGCGAGGAGGAGATCCCGGCGGAGTTGCGGGCGCTGGCC
GAGGAGTGGCGGGCGCACATGGTCGAGGCCGCCGCCGAGGCCAACGACGAACTGATGAACAAGTATCTGGAA
GGCGAGGAACTGAGCATCGAGGAGATCAAGGCCGGGCTGCGCCAGCGGACCCTGGCCAACCAGATCGTACCG
GCGGTGCTCGGCTCCTCGTTCAAGAACAAGGGCGTGCCTCTGGTGCTCGACGCGGTGATCGACTATCTCCCG
GCTCCGTCGGAAATCCCGGCGATCAGGGGCACCGACCCGGACGACGAAGAGAAGCACGACGAGCGCCATGCG
GACGACGACGAGCCGTTCTCGGCGCTGGCGTTCAAGATCGCCACCGACCCCTTCGTCGGCACCCTGACCTTC
GCCCGTGTGTATTCCGGGGTGCTGACTTCCGGCGATGCGGTGCTCAACTCGGTGAAAGGCAAGAAGGAGCGG
GTCGGGCGGATGGTGCAGATGCACGCCAACCAGCGCGACGAGATCAAGGAAGTGCGCGCCGGCGACATCGCC
GCGCTGATCGGCATGAAGGACGTGACCACCGGCGACACCCTGTGCGCCATCGACAAGCCGATCATCCTCGAA
CGCATGGACTTCCCCGATCCGGTGATCTCGGTGGCGGTGGAACCGAAGACCAAGGCCGACCAGGAGAAGATG
GGCATCGCCCTGAGCAAGCTGGCCCAGGAAGACCCGTCGTTCCGCGTGAAGACCGACGAGGAGACCGCGCAA
ACCATCATTTCCGGGATGGGCGAGTTGCACCTGGACATCATCGTCGACCGCATGCGCCGCGAGTTCGGCGTC
GAAGCCAATATCGGCAAGCCGCAGGTGGCCTATCGCGAGACCATCCGCAACACCTGCGAGATCGAGGGCAAG
TTCGTCCGCCAGTCCGGCGGCCGCGGCCAGTTCGGCCATTGCTGGATCCGCTTCGCTCCGGCCGACGAGGGG
CAGGAAGGCTTGGAGTTCCACAACGAGGTGGTCGGCGGGGTGATTCCCCGCGAGTTCATCCCGGCGATCCAG
AAGGGCATCGAGGACCAGATGCAGAACGGTGTGCTCGCCGGCTACCCGCTGATCGGCCTGAAGGCGACGGTG
TACGACGGCTCCTACCATGATGTCGACTCCAGCGAGATGGCGTTCAAGATCGCCGCCTCGATGGCCACCAAG
CAACTCTCGCAGAAGGGCGGAGCGGTGCTCCTGGAGCCGGTGATGAAGGTCGAGGTGGTGACCCCGGAGGAC
TACATGGGCGACGTGATGGGCGACCTCAACCGCCGGCGTGGCCTGATCCAGGGCATGGAGGATACCCCGGCG
GGCAAGGTGATCCGTGCCGAGGTCCCGCTGGGCGAAATGTTCGGCTATGCCACCGACGTGCGCTCGATGTCC
CAGGGGCGCGCGAGCTACTCGATGGAGTTCGTCCGCTATGCCGAGGTACCGGCCAGCGTGGCCGAGGCGATC
GTCGCCAGGCAGGGCCGCTGA