ViewGene
Locus Name:
GeneID:
Location:

GeneID:30
TrivialName: PA14_07500
AnnotatorUID: danlee
Modification Date/Time:2006-04-10 15:03:11
LocusName:PA14_07500
PAO1 Ortholog Locus:PA0575
Sequence Length:3738
Protein Length:1245
Start: 647084
Stop: 643347
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03964.1|AE004493_9 (AE004493) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1234/1245 (99%), Positives = 1239/1245 (99%)
Sequence:
ATGCAGCGTCTGCAGGCCGTGCTTCTCCTGTGTCTGGCCTGCTGCTGGCCGGGGCTGGCCGGCGCCCTCACG
CTCACGCCCGAGGAACGGGCCTGGCTGGCCGAGCACCCGAGCATCCGCCTGGGCGTGGACACCTCCTGGCCG
CCATTCGAGTTCCGCGACGAACAGGGCCGCTACCAGGGACTCGCCGCCGGCTACGTCAGCCTGCTGCAGGAA
CGCCTGGGCGTCAGCCTGACGCCTGTCGAACCGAAGACCTGGACGCAGGTCCTGGAGCAGGCCAAGGACGGT
CGGCTGGACCTGCTGCCCGGCATCATGGCTACCCCGGAGCGCCAGGAGTATCTGAGCTTCACCCGGCCCTAC
CTGGACTTCCCGATCATCATCCTGGCACGCAAGAACGGCCCGATGCCGAAGCGCATCGACGAGCTCTACGGA
CTCAAGGTCGCGGTGGTCGACCACTATGCTCCTCACGAACTGCTGATCGCCCAGCATCCCGACCTCACCCTG
CTGCCGCTGCCTTCGGTAGCGGCAGCCCTGCAGGCGCTGGCCACCGGCCAGGCCGACGCCTTCGTCGGCGAC
TTCGCCTCCAGCGTATGGAACCTCCGCCAGCTCAAGCTCAACGGCCTGGAGATCAGCGGCGAGACGCCATAC
CGCTACCAACTGGCGATGGCCGTGCCGCGCGGACAACCGATCCTCGCCGGGATCGTCGACAAGGTCCTCGCC
GACCTCAGCGCCGAGGAGATCGAGCGACTCCAGGCCCCCTGGGTCGGCGGCCTGCTCGACCGACGTCCGGCC
TGGCGCGAGATGGCGACCTACGGCCTTCCCATCGTCCTGCTGATCCTGGTCTCGGTCGCCATACTGCTGGCC
ATGAACCGCCGCCTGCGCCGCGAGGTGAGTCGCCGGCGGCAATTGGAGCGCGAACTGCGCGACAGCGAACAG
CACTACCGGGGACTGGTGGAAAGCCTGAATGCCATTGCCTGGGAAATGCGCCTCGAGGAGAACCGCTTCACC
TACGTCTCGCCCCACGCCGAACGCCTGCTCGGCTATCCCCTCGGCGAATGGCTGCAGCCGGGCTTCTGGCAG
CGGACCCTGCACCCCATGGACGCCGAGTACGCCATCCACTACTGCATGAGCGAAAGCCAGGCCGGACGCGAC
CACAGCTTCGACTACCGGATGCTCGCCGCCGACGGCCGGGTGGTCTGGATTCGCGATCTGGTCACCCCGATC
GCGCAAGGCCGGGACCTGCTCCTGCGCGGTCTGATGATCGACATCACCGAGGCCAAGCTCACCGAGCAGGCC
ATGCGCCTGTCCGAACAGAAGTTCGCTTCGGTGTTCCACCACTGTCCGGACATGGTGGTACTGGCCAATGGC
GCCGACGGCCGCTTCCTCGCGGTGAACAACACCTTCGAGCAGCAGATCGGCATCGCCGCCGACGACGCCATC
GGCAAGACCGCCACCGAACTGGGCATCTGGGCACTCCCCGGCCTGGGCCCGCAGGTCCTGGAAAAGCTCGGC
CACGGCAACCTGACCAACCTCGAGGTGCCCCTGCGGCGCCGCAATGGCAGTACCTTCAGCGCGCTGCTCAGC
GCCCAGCACGTGGCCCTCGACCAGACACCGGCGCTGGTGGTGGTGATCCGCGACATCACCCACCTGGTGGAG
ACCCAGGAACTGCTGCGGATCTCCGAGGAGAAGTTCGCCAACGCCTTCCATGCCTACCCCGACGGTCTGCTG
ATCAGCCGCCTCGAAGACGGCACGCTGATCGACGTGAACGAAGGCTTCACCCGTCTCACCGGCTACCGCCGC
GACGAGGTCATCTCCCGCTCCACGCTCGAACTCGGCCTGTGGGTCGACACCGAGGACCGCAAGCGCCTGATC
TCGCTGGTACGCCACCACACCCTGACCCAGGGCTTCACCGCCCCTGTACGGGACCGCAACGGTGGCATCCGC
CAGTGCGAGATGTCCGCCCACCGGATCAGCATCGATGGCGAGGACTGCGTGCTGACCATCGCCCGCGATATC
ACCGAGCGCCAGCTCATGCAGGAGAAGCTGCAGCAGGCCGCCACCGTCTTCGAAAGCACCGCCGAAGGCGTG
ATGATCACCGATACCCGCCAACGCATCACCGCGGTCAACCGCGCCTTCAGCGAGATCACCGGCTACAGCGAG
CAGGAGGCGCTGGGACGCTCGCCCAGCCTGCTCTCCTCCGGACAACACGACTCCAGCTTCTACCTCGCCATG
TGGAACCAGTTGGAACGCGACGGGCACTGGCAGGGCGAGATCTGGAACCGACGCAAGACCGGCGAGCTGTAC
CCCGAATGGCTGACCATCAGCGCGGTACACAATCCGCAGGGCGAGATCACCCACTTCGTCGGCGTCTTCGCC
GATATCTCCACCCTCAAGTACGCCCAGGCCCGGCTCGACTACCAGGCCCACCACGATCCGCTCACCGGCCTG
CCCAATCGCCTGCTGTTCGAGAGCCGGCTCAATCACGCCCTCGACGAGGCCCGCGAAGAGAGCCGTCCCGGC
GCCGTGCTGTTCATCGACCTGGACCGCTTCAAGCACATCAACGACAGCCTCGGCCATCCCATCGGCGACCTG
CTGCTCAAGGCCATCGCCGAACGCCTGCGCGACCAGTTGCGCGACGTCGATACCGTGGCCCGCCTGGGGGGC
GACGAATTCATCATCCTGCTCCCAGGCCTGCACCAGGAAAGCGACGCCGAGCACGTCGCGCGCAAGCTGCTG
AATGCCTTCACCGCGCCGTTCCAGGCCGAAGGTCATGAATTCTTCGTCAGCGCCAGCGTCGGCATCGCCCTG
TTCCCCAAGGACGGCGACGACGCCCCGACCCTGGTGAAGAACGCCGACGCCGCCATGTACCGCGCCAAGTCG
CGGGGCCGCAGCCGCATCGAGTACTACACCCGCGAACTGACCTACCTGGCCACCGAGCGCATGGCGCTGGAA
ACCGAACTGCGCCGCGCCCTCGAGCGCGACGAGTTGCAGCTCTACTACCAACCCAAGCTGAGCCTGGAGAGT
GGCCTGCTGGTCGGCGCCGAGGCACTGGTGCGCTGGTACCATCCGCTGTTCGGGGAAATTTCCCCGGAGCGC
TTCATCCCCCTCGCCGAGGATTGCGGCCTGATCCTGCCCCTCGGCGACTGGGTGCTGGGACACGCCTGCCAG
CAGATGGGCGAATGGCAAAAGCTGCACGCGCCGTTCGGCCCGCTGTCGGTCAACCTCGCCGGCGCCCAGCTC
GGCCAGCCGCAACTGATCGAACGCCTCGAGCAACTGCTGGAGCAGTCCGGCCTGGAACCGTCGCGGCTGCAA
CTGGAAATCACCGAGAGCTTCATCATGAACCAGACCGAGGAGGCCCTCGCCGTCCTCCACGGCCTCAAGCGC
CTCGGCGTACAGCTGGCGATCGACGACTTCGGCACCGGCTACTCCTCGCTCAGCTACCTCAAGCGCCTGCCG
CTGGACATCCTGAAGATCGACAAGTCGTTCATCCGCGGCCTCCCCGACGATCCCCACGATGCCGCCATCACC
CGCGCCATCATCGCCCTCGGCCGCAGCATGCAGCTCACGGTGATCGCCGAAGGCGTGGAAACCGAAGGCCAG
CAGAGCTTCCTCACCCACGAAGGCTGCGAGCAGATCCAGGGCTTCGTCCTCAGCCCGCCGCTGCCGGCCGAG
CTGTTCGCCAGCAAATTCCTCAAACCGCGCCAGCCGATTGGCGCTCCCCGAGAAGCGCCGGTATAA
Translation:
MQRLQAVLLLCLACCWPGLAGALTLTPEERAWLAEHPSIRLGVDTSWPPFEFRDEQGRYQGLAAGYVSLLQE
RLGVSLTPVEPKTWTQVLEQAKDGRLDLLPGIMATPERQEYLSFTRPYLDFPIIILARKNGPMPKRIDELYG
LKVAVVDHYAPHELLIAQHPDLTLLPLPSVAAALQALATGQADAFVGDFASSVWNLRQLKLNGLEISGETPY
RYQLAMAVPRGQPILAGIVDKVLADLSAEEIERLQAPWVGGLLDRRPAWREMATYGLPIVLLILVSVAILLA
MNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWEMRLEENRFTYVSPHAERLLGYPLGEWLQPGFWQ
RTLHPMDAEYAIHYCMSESQAGRDHSFDYRMLAADGRVVWIRDLVTPIAQGRDLLLRGLMIDITEAKLTEQA
MRLSEQKFASVFHHCPDMVVLANGADGRFLAVNNTFEQQIGIAADDAIGKTATELGIWALPGLGPQVLEKLG
HGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRDITHLVETQELLRISEEKFANAFHAYPDGLL
ISRLEDGTLIDVNEGFTRLTGYRRDEVISRSTLELGLWVDTEDRKRLISLVRHHTLTQGFTAPVRDRNGGIR
QCEMSAHRISIDGEDCVLTIARDITERQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSE
QEALGRSPSLLSSGQHDSSFYLAMWNQLERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVFA
DISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFKHINDSLGHPIGDL
LLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKLLNAFTAPFQAEGHEFFVSASVGIAL
FPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYTRELTYLATERMALETELRRALERDELQLYYQPKLSLES
GLLVGAEALVRWYHPLFGEISPERFIPLAEDCGLILPLGDWVLGHACQQMGEWQKLHAPFGPLSVNLAGAQL
GQPQLIERLEQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLKRLP
LDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGCEQIQGFVLSPPLPAE
LFASKFLKPRQPIGAPREAPV*
AnnotationID:40GeneID:30
AnnotatorUID: danlee
Modification Date/Time: 2005-07-15 17:05:07
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0575
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:63




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:30
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
57
                           PA0575_tr
                           translation of PA0575
                           1245
                           99.11
                           99.51
                           0
                           6372.0
     

     
     
11055
                           gb|AAG03964.1|AE004493_9
                           (AE004493) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           1245
                           99.11
                           99.51
                           0
                           6372.0
     

     
     
11056
                           gb|AAN66017.1|AE016230_8
                           (AE016775) sensory box protein [Pseudomonas putida KT2440]
                           1258
                           63.75
                           78.53
                           24
                           4227.0
     

     
     
11057
                           gb|AAO54078.1|
                           (AE016857) sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           1258
                           42.60
                           52.38
                           442
                           2792.0
     

     
     
11059
                           emb|CAD85611.1|
                           (BX321861) Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas europaea ATCC 19718]
                           1320
                           32.34
                           47.80
                           267
                           1585.0
     

     






      

          
GC ORFID: 43032How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0575Glimmer Score: 

          
Start: 6448427Stop: 6444690

          
Length: 3738


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0575 translation of PA0575Homolog Bit Score 2459.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6773 (ORF: BLASTX 1041.0), t_PA0285 (ORF: BLASTX 556.0), psyr_15may02_Scaffold2_revised_gene4046 (ORF: BLASTX 508.0), t_PA5295 (ORF: BLASTX 313.0), t_PA0575 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCGTCTGCAGGCCGTGCTTCTCCTGTGTCTGGCCTGCTGCTGGCCGGGGCTGGCCGGCGCCCTCACG 
CTCACGCCCGAGGAACGGGCCTGGCTGGCCGAGCACCCGAGCATCCGCCTGGGCGTGGACACCTCCTGGCCG 
CCATTCGAGTTCCGCGACGAACAGGGCCGCTACCAGGGACTCGCCGCCGGCTACGTCAGCCTGCTGCAGGAA 
CGCCTGGGCGTCAGCCTGACGCCTGTCGAACCGAAGACCTGGACGCAGGTCCTGGAGCAGGCCAAGGACGGT 
CGGCTGGACCTGCTGCCCGGCATCATGGCTACCCCGGAGCGCCAGGAGTATCTGAGCTTCACCCGGCCCTAC 
CTGGACTTCCCGATCATCATCCTGGCACGCAAGAACGGCCCGATGCCGAAGCGCATCGACGAGCTCTACGGA 
CTCAAGGTCGCGGTGGTCGACCACTATGCTCCTCACGAACTGCTGATCGCCCAGCATCCCGACCTCACCCTG 
CTGCCGCTGCCTTCGGTAGCGGCAGCCCTGCAGGCGCTGGCCACCGGCCAGGCCGACGCCTTCGTCGGCGAC 
TTCGCCTCCAGCGTATGGAACCTCCGCCAGCTCAAGCTCAACGGCCTGGAGATCAGCGGCGAGACGCCATAC 
CGCTACCAACTGGCGATGGCCGTGCCGCGCGGACAACCGATCCTCGCCGGGATCGTCGACAAGGTCCTCGCC 
GACCTCAGCGCCGAGGAGATCGAGCGACTCCAGGCCCCCTGGGTCGGCGGCCTGCTCGACCGACGTCCGGCC 
TGGCGCGAGATGGCGACCTACGGCCTTCCCATCGTCCTGCTGATCCTGGTCTCGGTCGCCATACTGCTGGCC 
ATGAACCGCCGCCTGCGCCGCGAGGTGAGTCGCCGGCGGCAATTGGAGCGCGAACTGCGCGACAGCGAACAG 
CACTACCGGGGACTGGTGGAAAGCCTGAATGCCATTGCCTGGGAAATGCGCCTCGAGGAGAACCGCTTCACC 
TACGTCTCGCCCCACGCCGAACGCCTGCTCGGCTATCCCCTCGGCGAATGGCTGCAGCCGGGCTTCTGGCAG 
CGGACCCTGCACCCCATGGACGCCGAGTACGCCATCCACTACTGCATGAGCGAAAGCCAGGCCGGACGCGAC 
CACAGCTTCGACTACCGGATGCTCGCCGCCGACGGCCGGGTGGTCTGGATTCGCGATCTGGTCACCCCGATC 
GCGCAAGGCCGGGACCTGCTCCTGCGCGGTCTGATGATCGACATCACCGAGGCCAAGCTCACCGAGCAGGCC 
ATGCGCCTGTCCGAACAGAAGTTCGCTTCGGTGTTCCACCACTGTCCGGACATGGTGGTACTGGCCAATGGC 
GCCGACGGCCGCTTCCTCGCGGTGAACAACACCTTCGAGCAGCAGATCGGCATCGCCGCCGACGACGCCATC 
GGCAAGACCGCCACCGAACTGGGCATCTGGGCACTCCCCGGCCTGGGCCCGCAGGTCCTGGAAAAGCTCGGC 
CACGGCAACCTGACCAACCTCGAGGTGCCCCTGCGGCGCCGCAATGGCAGTACCTTCAGCGCGCTGCTCAGC 
GCCCAGCACGTGGCCCTCGACCAGACACCGGCGCTGGTGGTGGTGATCCGCGACATCACCCACCTGGTGGAG 
ACCCAGGAACTGCTGCGGATCTCCGAGGAGAAGTTCGCCAACGCCTTCCATGCCTACCCCGACGGTCTGCTG 
ATCAGCCGCCTCGAAGACGGCACGCTGATCGACGTGAACGAAGGCTTCACCCGTCTCACCGGCTACCGCCGC 
GACGAGGTCATCTCCCGCTCCACGCTCGAACTCGGCCTGTGGGTCGACACCGAGGACCGCAAGCGCCTGATC 
TCGCTGGTACGCCACCACACCCTGACCCAGGGCTTCACCGCCCCTGTACGGGACCGCAACGGTGGCATCCGC 
CAGTGCGAGATGTCCGCCCACCGGATCAGCATCGATGGCGAGGACTGCGTGCTGACCATCGCCCGCGATATC 
ACCGAGCGCCAGCTCATGCAGGAGAAGCTGCAGCAGGCCGCCACCGTCTTCGAAAGCACCGCCGAAGGCGTG 
ATGATCACCGATACCCGCCAACGCATCACCGCGGTCAACCGCGCCTTCAGCGAGATCACCGGCTACAGCGAG 
CAGGAGGCGCTGGGACGCTCGCCCAGCCTGCTCTCCTCCGGACAACACGACTCCAGCTTCTACCTCGCCATG 
TGGAACCAGTTGGAACGCGACGGGCACTGGCAGGGCGAGATCTGGAACCGACGCAAGACCGGCGAGCTGTAC 
CCCGAATGGCTGACCATCAGCGCGGTACACAATCCGCAGGGCGAGATCACCCACTTCGTCGGCGTCTTCGCC 
GATATCTCCACCCTCAAGTACGCCCAGGCCCGGCTCGACTACCAGGCCCACCACGATCCGCTCACCGGCCTG 
CCCAATCGCCTGCTGTTCGAGAGCCGGCTCAATCACGCCCTCGACGAGGCCCGCGAAGAGAGCCGTCCCGGC 
GCCGTGCTGTTCATCGACCTGGACCGCTTCAAGCACATCAACGACAGCCTCGGCCATCCCATCGGCGACCTG 
CTGCTCAAGGCCATCGCCGAACGCCTGCGCGACCAGTTGCGCGACGTCGATACCGTGGCCCGCCTGGGGGGC 
GACGAATTCATCATCCTGCTCCCAGGCCTGCACCAGGAAAGCGACGCCGAGCACGTCGCGCGCAAGCTGCTG 
AATGCCTTCACCGCGCCGTTCCAGGCCGAAGGTCATGAATTCTTCGTCAGCGCCAGCGTCGGCATCGCCCTG 
TTCCCCAAGGACGGCGACGACGCCCCGACCCTGGTGAAGAACGCCGACGCCGCCATGTACCGCGCCAAGTCG 
CGGGGCCGCAGCCGCATCGAGTACTACACCCGCGAACTGACCTACCTGGCCACCGAGCGCATGGCGCTGGAA 
ACCGAACTGCGCCGCGCCCTCGAGCGCGACGAGTTGCAGCTCTACTACCAACCCAAGCTGAGCCTGGAGAGT 
GGCCTGCTGGTCGGCGCCGAGGCACTGGTGCGCTGGTACCATCCGCTGTTCGGGGAAATTTCCCCGGAGCGC 
TTCATCCCCCTCGCCGAGGATTGCGGCCTGATCCTGCCCCTCGGCGACTGGGTGCTGGGACACGCCTGCCAG 
CAGATGGGCGAATGGCAAAAGCTGCACGCGCCGTTCGGCCCGCTGTCGGTCAACCTCGCCGGCGCCCAGCTC 
GGCCAGCCGCAACTGATCGAACGCCTCGAGCAACTGCTGGAGCAGTCCGGCCTGGAACCGTCGCGGCTGCAA 
CTGGAAATCACCGAGAGCTTCATCATGAACCAGACCGAGGAGGCCCTCGCCGTCCTCCACGGCCTCAAGCGC 
CTCGGCGTACAGCTGGCGATCGACGACTTCGGCACCGGCTACTCCTCGCTCAGCTACCTCAAGCGCCTGCCG 
CTGGACATCCTGAAGATCGACAAGTCGTTCATCCGCGGCCTCCCCGACGATCCCCACGATGCCGCCATCACC 
CGCGCCATCATCGCCCTCGGCCGCAGCATGCAGCTCACGGTGATCGCCGAAGGCGTGGAAACCGAAGGCCAG 
CAGAGCTTCCTCACCCACGAAGGCTGCGAGCAGATCCAGGGCTTCGTCCTCAGCCCGCCGCTGCCGGCCGAG 
CTGTTCGCCAGCAAATTCCTCAAACCGCGCCAGCCGATTGGCGCTCCCCGAGAAGCGCCGGTATAA