ViewGene
Locus Name:
GeneID:
Location:

GeneID:2999
TrivialName: PA14_63780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63780
PAO1 Ortholog Locus:PA4824
Sequence Length:777
Protein Length:258
Start: 5685955
Stop: 5685179
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08209.1|AE004895_9 (AE004895) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 257/258 (99%), Positives = 257/258 (99%)
Sequence:
ATGACCCTGCACGACCGGCGCCCGCGGGCGCCCCTTTTCCAACCGCTGCCGGCCGCGCTGCGACGCGCCCTG
TCCTGGCGCCTGGGCTTCGTCGCCGCCGCGCTCGCCTGCGTCCTGCTGCTGGCGCTGCTGTCCGAGGCTCGC
GCCGCGGGCGGCGCCTACCGGGTCGACGACGGCGAGATCGATCCCGTCGGCGAATGCAATCTGGACGCCTGG
CACCAGCGCGAACGCCACCACGGCAACCGCTACCAGTCGGTGCTGTCGCCCGCCTGCACCTTCTCCGCCCTA
CCATCGGTGCAACTCGGCGCGGCGCTGGTGCGCGAGGGCGACGCAGGCGATCGGCACAGCCGCCTCAGCCCC
GAGCTGAAGACACCGCTGCTGGCCCGCGACGACCTCGGCCTGGCGTTGGCCCTGGCGCTCTCGGCGGATCTC
TACCTGGACCGCCGGCACGCTTTCGAAGGCGCCGGCTTCAACCTGCCGCTGAGCTACCAGCCGTTCGAGGCC
CTGCGCCTGAACGCCGGGGTCGGCCTGGGGCATGCTTACGCCGAGGGCGAGCGCCGGCATCGCTGGAACTGG
GGCATGGGCATGGAATACCGCGTCGGCCAGCCGTTGACCCTGATCGCCGAACGCTTCGGCGAGTCGGCCGGC
GACAGCGGCTGGCAGGCCGGACCGCGGCTGCACCTGGGCGAACGGCTGGACCTCGACCTGCTGGTCGGCGGC
CACCTGCGCGGCGAGCGCGAGCGATGGCTGGTCTCGGGAGCGACCTTGCGTTTCTGA
Translation:
MTLHDRRPRAPLFQPLPAALRRALSWRLGFVAAALACVLLLALLSEARAAGGAYRVDDGEIDPVGECNLDAW
HQRERHHGNRYQSVLSPACTFSALPSVQLGAALVREGDAGDRHSRLSPELKTPLLARDDLGLALALALSADL
YLDRRHAFEGAGFNLPLSYQPFEALRLNAGVGLGHAYAEGERRHRWNWGMGMEYRVGQPLTLIAERFGESAG
DSGWQAGPRLHLGERLDLDLLVGGHLRGERERWLVSGATLRF*
AnnotationID:3007GeneID:2999
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4824
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6001




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23143




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2999
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4858
                           PA4824_tr
                           translation of PA4824
                           258
                           99.61
                           99.61
                           0
                           1353.0
     

     
     
138104
                           gb|AAG08209.1|AE004895_9
                           (AE004895) hypothetical protein PA4824 [Pseudomonas aeruginosa PAO1]
                           258
                           99.61
                           99.61
                           0
                           1353.0
     

     






      

          
GC ORFID: 46001How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4824Glimmer Score: 

          
Start: 4949635Stop: 4948859

          
Length: 777


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4824 translation of PA4824Homolog Bit Score 525.0

          
Other Homologs:  t_PA4824 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGCACGACCGGCGCCCGCGGGCGCCCCTTTTCCAACCGCTGCCGGCCGCGCTGCGACGCGCCCTG 
TCCTGGCGCCTGGGCTTCGTCGCCGCCGCGCTCGCCTGCGTCCTGCTGCTGGCGCTGCTGTCCGAGGCTCGC 
GCCGCGGGCGGCGCCTACCGGGTCGACGACGGCGAGATCGATCCCGTCGGCGAATGCAATCTGGACGCCTGG 
CACCAGCGCGAACGCCACCACGGCAACCGCTACCAGTCGGTGCTGTCGCCCGCCTGCACCTTCTCCGCCCTA 
CCATCGGTGCAACTCGGCGCGGCGCTGGTGCGCGAGGGCGACGCAGGCGATCGGCACAGCCGCCTCAGCCCC 
GAGCTGAAGACACCGCTGCTGGCCCGCGACGACCTCGGCCTGGCGTTGGCCCTGGCGCTCTCGGCGGATCTC 
TACCTGGACCGCCGGCACGCTTTCGAAGGCGCCGGCTTCAACCTGCCGCTGAGCTACCAGCCGTTCGAGGCC 
CTGCGCCTGAACGCCGGGGTCGGCCTGGGGCATGCTTACGCCGAGGGCGAGCGCCGGCATCGCTGGAACTGG 
GGCATGGGCATGGAATACCGCGTCGGCCAGCCGTTGACCCTGATCGCCGAACGCTTCGGCGAGTCGGCCGGC 
GACAGCGGCTGGCAGGCCGGACCGCGGCTGCACCTGGGCGAACGGCTGGACCTCGACCTGCTGGTCGGCGGC 
CACCTGCGCGGCGAGCGCGAGCGATGGCTGGTCTCGGGAGCGACCTTGCGTTTCTGA