ViewGene

Locus Name:
GeneID:
Location:

GeneID:2998
TrivialName: PA14_62120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62120
PAO1 Ortholog Locus:PA4693
Sequence Length:816
Protein Length:271
Start: 5544232
Stop: 5543417
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08079.1|AE004883_3 (AE004883) phosphatidylserine synthase [Pseudomonas aeruginosa PAO1]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
ATGAGTGAACGTCCCGAGGAGCCGAACAAGGCCTCCGACGAAGAAAGCCTGCTGCCCATCGACGAACATATA
GAAGAAGGGCACGACGCCGAAGGGCGGAAGGTTCGTCACCGCGGTATCTACCTGCTGCCCAACCTGTTCACC
ACGGCGGCCCTGTTTTCCGGCTTCTACGCCATCATCAATGGCATGAGCGGCCAGTTCGCCAACGCCGCCATC
GCTATCTTCGTGGCCATGGTCCTCGATGGACTGGACGGCCGTGTGGCTCGCCTGACCAACACCCAGAGCGCC
TTCGGCGCCGAGTACGACTCGCTGTCCGACATGGTCGCCTTCGGTGTGGCGCCGGCGCTGGTCGCCTTCGAA
TGGGCGCTTGGCAGCCTCGGCAAGGTCGGCTGGATGGTCGCCTTCATCTACGTTGCGGGCGCAGCCCTGCGT
CTGGCTCGTTTCAACACCCAGGTCGGCAAGGCCGACAAGCGCTATTTCATCGGCCTGGCCAGTCCGGCCGCC
GCGGCGCTGGTGGCGGGCACGGTATGGGCGTTCAGCGATTTCGAGATCCAGGGCGCCAAGGTTGCCTTCCTC
GTCGCCCTGCTGGTCGCCGCCGCTGGTGTGCTGATGGTCAGCAACATCAAGTACCACAGCTTCAAGGATCTC
GACCTGCGCGGCCGGGTGCCGTTCGTGGCGATCCTTATCGTGGTGCTGGCCTTCGCCGTGGTCTTTACCGAC
CCGCCGCGCATCCTCCTGTTGCTGTTCCTTGCCTACGCGGCCTCCGGTCCTGTGCAATACCTGCTGCAGCTG
CGTCGCCGGAAGCAGCCGAGCTGA
Translation:
MSERPEEPNKASDEESLLPIDEHIEEGHDAEGRKVRHRGIYLLPNLFTTAALFSGFYAIINGMSGQFANAAI
AIFVAMVLDGLDGRVARLTNTQSAFGAEYDSLSDMVAFGVAPALVAFEWALGSLGKVGWMVAFIYVAGAALR
LARFNTQVGKADKRYFIGLASPAAAALVAGTVWAFSDFEIQGAKVAFLVALLVAAAGVLMVSNIKYHSFKDL
DLRGRVPFVAILIVVLAFAVVFTDPPRILLLLFLAYAASGPVQYLLQLRRRKQPS*
AnnotationID:3006GeneID:2998
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 20:08:01
Gene Name:pssA
Confidence Code:2
GeneProduct:phosphatidylserine synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:CDP-diacylglycerol--serine O-phosphatidyltransferase
Functional Category Confidence Code:5
COGs:COG1183
Secondary Functional Category(ies):
EC Number:2.7.8.8
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70250.1|AE016665_3 (AE016791) CDP-diacylglycerol--serine O-phosphatidyltransferase
           [Pseudomonas putida KT2440]
          Length = 283

 Score =  452 bits (1164), Expect = e-127
 Identities = 232/282 (82%), Positives = 254/282 (90%), Gaps = 14/282 (4%)

>gb|AAO54518.1| (AE016859) CDP-diacylglycerol--serine O-phosphatidyltransferase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 283

 Score =  451 bits (1159), Expect = e-126
 Identities = 232/283 (81%), Positives = 253/283 (89%), Gaps = 14/283 (4%)

>gb|AAM39957.1| (AE012162) phosphatidylserine synthase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 257

 Score =  251 bits (641), Expect = 3e-66
 Identities = 135/245 (55%), Positives = 174/245 (71%), Gaps = 14/245 (5%)
Structural Features:
COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]
CD-Length = 234 residues, 100.0% aligned
Score =  195 bits (496), Expect = 6e-51
Identities = 93/238 (39%), Positives = 135/238 (56%), Gaps = 6/238 (2%)
Genomic Context:
Comment:
ReferenceID:5999
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23141
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37604
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2998_cdd.html
URL:
ReferenceID:37757
Author/Investigator(s): Djafari S, Ebel F, Deibel C, Kramer S, Hudel M, Chakraborty T.
Title: Characterization of an exported protease from Shiga toxin-producing Escherichia coli.
PubMed: 9379905
MedLine:
Source:
Mol Microbiol. 1997 Aug;25(4):771-84.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9379905
Homologs By Global Alignment
Gene ID:2998

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4857 PA4693_tr translation of PA4693 271 99.99 99.99 0 1352.0
138086 gb|AAG08079.1|AE004883_3 (AE004883) phosphatidylserine synthase [Pseudomonas aeruginosa PAO1] 271 99.99 99.99 0 1352.0
138087 gb|AAN70250.1|AE016665_3 (AE016791) CDP-diacylglycerol--serine O-phosphatidyltransferase [Pseudomonas putida KT2440] 285 81.40 89.12 16 1171.0
138088 gb|AAO54518.1| (AE016859) CDP-diacylglycerol--serine O-phosphatidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] 285 81.40 88.77 16 1167.0
138094 emb|CAE41097.1| (BX640413) putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 284 52.11 61.61 38 663.0
GC ORFID: 46000How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4693Glimmer Score:
Start: 4807912Stop: 4807097
Length: 816
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4693 translation of PA4693Homolog Bit Score 525.0
Other Homologs: psyr_15may02_Scaffold19_revised_gene2876 (ORF: BLASTX 448.0), t_PA4693 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGAACGTCCCGAGGAGCCGAACAAGGCCTCCGACGAAGAAAGCCTGCTGCCCATCGACGAACATATA
GAAGAAGGGCACGACGCCGAAGGGCGGAAGGTTCGTCACCGCGGTATCTACCTGCTGCCCAACCTGTTCACC
ACGGCGGCCCTGTTTTCCGGCTTCTACGCCATCATCAATGGCATGAGCGGCCAGTTCGCCAACGCCGCCATC
GCTATCTTCGTGGCCATGGTCCTCGATGGACTGGACGGCCGTGTGGCTCGCCTGACCAACACCCAGAGCGCC
TTCGGCGCCGAGTACGACTCGCTGTCCGACATGGTCGCCTTCGGTGTGGCGCCGGCGCTGGTCGCCTTCGAA
TGGGCGCTTGGCAGCCTCGGCAAGGTCGGCTGGATGGTCGCCTTCATCTACGTTGCGGGCGCAGCCCTGCGT
CTGGCTCGTTTCAACACCCAGGTCGGCAAGGCCGACAAGCGCTATTTCATCGGCCTGGCCAGTCCGGCCGCC
GCGGCGCTGGTGGCGGGCACGGTATGGGCGTTCAGCGATTTCGAGATCCAGGGCGCCAAGGTTGCCTTCCTC
GTCGCCCTGCTGGTCGCCGCCGCTGGTGTGCTGATGGTCAGCAACATCAAGTACCACAGCTTCAAGGATCTC
GACCTGCGCGGCCGGGTGCCGTTCGTGGCGATCCTTATCGTGGTGCTGGCCTTCGCCGTGGTCTTTACCGAC
CCGCCGCGCATCCTCCTGTTGCTGTTCCTTGCCTACGCGGCCTCCGGTCCTGTGCAATACCTGCTGCAGCTG
CGTCGCCGGAAGCAGCCGAGCTGA