ViewGene
Locus Name:
GeneID:
Location:

GeneID:2997
TrivialName: PA14_56040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56040
PAO1 Ortholog Locus:PA4312
Sequence Length:762
Protein Length:253
Start: 5004141
Stop: 5004902
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07700.1|AE004847_7 (AE004847) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 250/253 (98%), Positives = 250/253 (98%)
Sequence:
ATGGCTGAACGCAGCCTGCTGCTGGTGTTGCACGACGTGGCCCCGGAAACCTGGCCGGACTACCGGCCCTTC
GTCGAGGCCGTGGACGCGCTCGGCCAGGTCCCCATGACCTGGCTGGTAGTGCCCGACTTCCACCATCGCAAC
CCGTTGGAAGCCGACGAAAAGTTCTGCGAACTGCTCTCGCGGCGGGTGGCCCGGGGTGACGAACTGGCTCTC
CACGGCTTCTATCACTACGATGACGCCCCACCACCGCGTACTCCAGGGCAATACTTCATGCGTCGCATCTAC
ACCTGGGAGGGAGAGTTCTATGCCCTCGACCACGCCGAGGCCAAGGCCCGCCTGGCCGCCGGCATCGAACTG
TTCCGCCGCCGCGGATGGCCGCTGCACGGTTTCGTCGCGCCGGCCTGGCTGATGAGCGCCGGCACCCGCCAG
GCGCTCGGCGAGAGCGGACTGCGCTACACCAGCGACCCGTCCAACCTGTATCGGCTTCCCCACCTGCAACCG
ATCGAGGCCCCCGGTCTGGTCTGGAGCGCGCGCAGTGCCTGGCGTCGCGGCCTCTCCTGGGCACTCAGCGAG
CAGCGCCGGCGGGCCTGGCGCGCAGCGCCGGTGATCCGTCTCGGACTCCATCCGGTCGACATGCGCCATCGC
TTTTCCCGCGAATACTGGCTGCGTACCCTGCGCACCCTGCTGTCCGAGGGACGCCAGCCGCTGACCAAGATC
GACTGGCTGGAGCGCCACCTCGCCCTGGACCGCGCGGCATGA
Translation:
MAERSLLLVLHDVAPETWPDYRPFVEAVDALGQVPMTWLVVPDFHHRNPLEADEKFCELLSRRVARGDELAL
HGFYHYDDAPPPRTPGQYFMRRIYTWEGEFYALDHAEAKARLAAGIELFRRRGWPLHGFVAPAWLMSAGTRQ
ALGESGLRYTSDPSNLYRLPHLQPIEAPGLVWSARSAWRRGLSWALSEQRRRAWRAAPVIRLGLHPVDMRHR
FSREYWLRTLRTLLSEGRQPLTKIDWLERHLALDRAA*
AnnotationID:3005GeneID:2997
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 09:09:04
Gene Name:
Confidence Code:3
GeneProduct:putative deacetylase
Cell Localization:()
Synonyms:PA4312
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3233
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3233, Predicted deacetylase
CD-Length = 233 residues,  99.1% aligned
Score =  250 bits (639), Expect = 1e-67
Identities = 92/250 (36%), Positives = 113/250 (45%), Gaps = 20/250 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5997




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23139




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36679




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2997_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2997
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4856
                           PA4312_tr
                           translation of PA4312
                           253
                           98.81
                           98.81
                           0
                           1353.0
     

     
     
138084
                           gb|AAG07700.1|AE004847_7
                           (AE004847) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           253
                           98.81
                           98.81
                           0
                           1353.0
     

     
     
138085
                           gb|AAN66992.1|AE016327_7
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           253
                           64.82
                           72.72
                           10
                           877.0
     

     






      

          
GC ORFID: 45999How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4312Glimmer Score: 

          
Start: 4267817Stop: 4268578

          
Length: 762


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4312 translation of PA4312Homolog Bit Score 525.0

          
Other Homologs:  t_PA4312 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGAACGCAGCCTGCTGCTGGTGTTGCACGACGTGGCCCCGGAAACCTGGCCGGACTACCGGCCCTTC 
GTCGAGGCCGTGGACGCGCTCGGCCAGGTCCCCATGACCTGGCTGGTAGTGCCCGACTTCCACCATCGCAAC 
CCGTTGGAAGCCGACGAAAAGTTCTGCGAACTGCTCTCGCGGCGGGTGGCCCGGGGTGACGAACTGGCTCTC 
CACGGCTTCTATCACTACGATGACGCCCCACCACCGCGTACTCCAGGGCAATACTTCATGCGTCGCATCTAC 
ACCTGGGAGGGAGAGTTCTATGCCCTCGACCACGCCGAGGCCAAGGCCCGCCTGGCCGCCGGCATCGAACTG 
TTCCGCCGCCGCGGATGGCCGCTGCACGGTTTCGTCGCGCCGGCCTGGCTGATGAGCGCCGGCACCCGCCAG 
GCGCTCGGCGAGAGCGGACTGCGCTACACCAGCGACCCGTCCAACCTGTATCGGCTTCCCCACCTGCAACCG 
ATCGAGGCCCCCGGTCTGGTCTGGAGCGCGCGCAGTGCCTGGCGTCGCGGCCTCTCCTGGGCACTCAGCGAG 
CAGCGCCGGCGGGCCTGGCGCGCAGCGCCGGTGATCCGTCTCGGACTCCATCCGGTCGACATGCGCCATCGC 
TTTTCCCGCGAATACTGGCTGCGTACCCTGCGCACCCTGCTGTCCGAGGGACGCCAGCCGCTGACCAAGATC 
GACTGGCTGGAGCGCCACCTCGCCCTGGACCGCGCGGCATGA