ViewGene

Locus Name:
GeneID:
Location:

GeneID:2996
TrivialName: PA14_13060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13060
PAO1 Ortholog Locus:PA3927
Sequence Length:789
Protein Length:262
Start: 1121623
Stop: 1120835
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07314.1|AE004810_6 (AE004810) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 260/262 (99%), Positives = 260/262 (99%)
Sequence:
ATGCTGATCGAGCACCGCCCGGACGGCCTGCTGGCCGCCATCTCCCTCGACTTCCCCGACAGCCATCACCTG
GGGCGGCATTTCCACCCGCAGGCGCAGTTCCTCTACGCCGCTCGCGGCCTGATGCGCCTGGCCACCCACCAC
GGCGCCTGGGTGATCCCGCCGACCCGCGCGGTATGGATTCCGCCCCGGGTGGAGCACGAGATATTCATGTCC
GGCGAGGTGCACATGCGCACCCTGTTCATCGAGCAACCCGAAACGCCGACACCGCTAAGCGACTGTTGCGTA
CTGGCGGTGACGCCGCTGCTGCGGGAAATGATCCTGCGCGCCATCCACCTCGAGAGCCAGCCGCGCCTGGAC
GACTTCCGCCAGCGCCTGCAAGGGCTGATCCTCAGCGAGATCGCCAACCTCGAACGGATGCCGCTGTACCTG
CCGATGCCCCGCGACCGCCGCTTGCAGGCGATCTGCCAGGCATTGCTGAAACAGCCGGAACTGGGGCTGACC
CTCGATGACTGGGGCCTGCGGGTCGGCGCCAGCTCGCGCACCCTGGCGCGGCTGTTCGCCCAGGAATTGCAG
ATGAGCTTCCATGAGTGGCGCCAGCAACTGCGCCTGACCGAAGCCCTGCCGCGCCTGCTGGCCGGCGACAGC
GTGCAGGTGGTCGCCCGCGACCTCGGCTACGGTAGTACGCGGGCCTTCAGCAGCATGTTCCGTCGCCTGCTC
GGCGAAACCCCGCGCGACTACCTGGGGCGACTGGAGCAACTGGCACGGGTCAGGGGCCGCGAGGACTGA
Translation:
MLIEHRPDGLLAAISLDFPDSHHLGRHFHPQAQFLYAARGLMRLATHHGAWVIPPTRAVWIPPRVEHEIFMS
GEVHMRTLFIEQPETPTPLSDCCVLAVTPLLREMILRAIHLESQPRLDDFRQRLQGLILSEIANLERMPLYL
PMPRDRRLQAICQALLKQPELGLTLDDWGLRVGASSRTLARLFAQELQMSFHEWRQQLRLTEALPRLLAGDS
VQVVARDLGYGSTRAFSSMFRRLLGETPRDYLGRLEQLARVRGRED*
AnnotationID:3004GeneID:2996
AnnotatorUID: urbach
Modification Date/Time: 2004-03-23 19:07:06
Gene Name:
Confidence Code:3
GeneProduct:probable AraC-type transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342,COG2169,COG4977,COG4753,pfam00165,pfam02311
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:5995
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23137
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2996

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4851 PA3927_tr translation of PA3927 262 99.23 99.23 0 1351.0
138070 gb|AAG07314.1|AE004810_6 (AE004810) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 262 99.23 99.23 0 1351.0
4853 PA3830_tr translation of PA3830 288 38.19 51.04 44 467.0
138077 gb|AAG07217.1|AE004800_6 (AE004800) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 288 38.19 51.04 44 467.0
138081 gb|AAG04988.1|AE004588_1 (AE004588) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 275 37.45 50.54 28 421.0
GC ORFID: 45998How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3927Glimmer Score:
Start: 3832315Stop: 3833103
Length: 789
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3927 translation of PA3927Homolog Bit Score 525.0
Other Homologs: t_PA0791 (ORF: BLASTX 184.0), t_PA3830 (ORF: BLASTX 182.0), t_PA1599 (ORF: BLASTX 171.0), t_PA0163 (ORF: BLASTX 166.0), t_PA3927 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGATCGAGCACCGCCCGGACGGCCTGCTGGCCGCCATCTCCCTCGACTTCCCCGACAGCCATCACCTG
GGGCGGCATTTCCACCCGCAGGCGCAGTTCCTCTACGCCGCTCGCGGCCTGATGCGCCTGGCCACCCACCAC
GGCGCCTGGGTGATCCCGCCGACCCGCGCGGTATGGATTCCGCCCCGGGTGGAGCACGAGATATTCATGTCC
GGCGAGGTGCACATGCGCACCCTGTTCATCGAGCAACCCGAAACGCCGACACCGCTAAGCGACTGTTGCGTA
CTGGCGGTGACGCCGCTGCTGCGGGAAATGATCCTGCGCGCCATCCACCTCGAGAGCCAGCCGCGCCTGGAC
GACTTCCGCCAGCGCCTGCAAGGGCTGATCCTCAGCGAGATCGCCAACCTCGAACGGATGCCGCTGTACCTG
CCGATGCCCCGCGACCGCCGCTTGCAGGCGATCTGCCAGGCATTGCTGAAACAGCCGGAACTGGGGCTGACC
CTCGATGACTGGGGCCTGCGGGTCGGCGCCAGCTCGCGCACCCTGGCGCGGCTGTTCGCCCAGGAATTGCAG
ATGAGCTTCCATGAGTGGCGCCAGCAACTGCGCCTGACCGAAGCCCTGCCGCGCCTGCTGGCCGGCGACAGC
GTGCAGGTGGTCGCCCGCGACCTCGGCTACGGTAGTACGCGGGCCTTCAGCAGCATGTTCCGTCGCCTGCTC
GGCGAAACCCCGCGCGACTACCTGGGGCGACTGGAGCAACTGGCACGGGTCAGGGGCCGCGAGGACTGA