ViewGene
Locus Name:
GeneID:
Location:

GeneID:2995
TrivialName: PA14_19860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19860
PAO1 Ortholog Locus:PA3419
Sequence Length:813
Protein Length:270
Start: 1713254
Stop: 1712442
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06807.1|AE004763_2 (AE004763) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 266/270 (98%), Positives = 266/270 (98%)
Sequence:
ATGGACCCGCGTCAAGCCTGCCTCGATTGTCTCGCCCAGGAACCGCCAGCGCTGTTCGAGGCGGCCCTGTGG
ATCGCCGCGGAGCACCTCCCGGCGTATTCGCCCGCCCACGCCCTGCGCGAGCTCGACGAACTCGTCCGGCAG
ATCGGCGCGAGCCTGGACGATCGCGCCTCGGCCAGCGAGCGCGCCCAGGGGTTGCTGCGGCGAATGAGCGAA
CAGGGTTTCTGCGAGGACGACGACTTCCCCCTGCAACCGCGCTCGGCCCTGCTTCCGCTGGTGCTGCAGCGG
CGCCAGGGACAGCCGTTGTCGCTGGCGCTGGTGGCCATGGAACTGGCGCGGCGGCTGGACATTCCGCTGGTC
GGAGTGAACTTCCCGGGACGCTTCCTGCTGCGCGTGCCGCAGGCCGACCATCTGCTCGACCCGGCCACCGGA
CGGCGCCTCTATCCCACCGACTGCCGCGAACTGCTGCTGCGCCTGCAGGGGCCGAAGAGCGAGCTGCAGGCC
GCCTACCTGAAGCAGGCCTCTCCCGGGGAAATCCTCCAGCGTCTGTCGCGCAACCTGCGACAACTGCACAGC
GCCGTCGGCGAGCCGCTGGCCGCGCTGAAGGATGCCCAGCGGGTGATCGAACTCGGCCCGGTGGGCGCCGCC
GACCACGAGGCCCGCGCCGGCCTCTATCGGCAACTGGATTGCCCGCAGGCGGAACGCTACGACCTGGAACGC
GCGCTCTTGCTCAGCGACGATCCCACCGAGCAACTGCGCCTCGGCCAGCGCCTGGGCGAACTCGCCCCGCCG
ACCGGCCGCGCCCTGCACTGA
Translation:
MDPRQACLDCLAQEPPALFEAALWIAAEHLPAYSPAHALRELDELVRQIGASLDDRASASERAQGLLRRMSE
QGFCEDDDFPLQPRSALLPLVLQRRQGQPLSLALVAMELARRLDIPLVGVNFPGRFLLRVPQADHLLDPATG
RRLYPTDCRELLLRLQGPKSELQAAYLKQASPGEILQRLSRNLRQLHSAVGEPLAALKDAQRVIELGPVGAA
DHEARAGLYRQLDCPQAERYDLERALLLSDDPTEQLRLGQRLGELAPPTGRALH*
AnnotationID:3003GeneID:2995
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 12:12:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3419
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5993




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23135




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32147




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2995_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2995
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4850
                           PA3419_tr
                           translation of PA3419
                           270
                           98.51
                           98.51
                           0
                           1353.0
     

     
     
138067
                           gb|AAG06807.1|AE004763_2
                           (AE004763) hypothetical protein PA3419 [Pseudomonas aeruginosa PAO1]
                           270
                           98.51
                           98.51
                           0
                           1353.0
     

     
     
138069
                           gb|AAN70191.1|AE016658_8
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           270
                           58.51
                           74.07
                           2
                           778.0
     

     
     
138068
                           gb|AAO54718.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           270
                           57.40
                           75.18
                           3
                           778.0
     

     






      

          
GC ORFID: 45997How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3419Glimmer Score: 

          
Start: 3240678Stop: 3241490

          
Length: 813


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3419 translation of PA3419Homolog Bit Score 525.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5029 (ORF: BLASTX 293.0), t_PA3419 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCCGCGTCAAGCCTGCCTCGATTGTCTCGCCCAGGAACCGCCAGCGCTGTTCGAGGCGGCCCTGTGG 
ATCGCCGCGGAGCACCTCCCGGCGTATTCGCCCGCCCACGCCCTGCGCGAGCTCGACGAACTCGTCCGGCAG 
ATCGGCGCGAGCCTGGACGATCGCGCCTCGGCCAGCGAGCGCGCCCAGGGGTTGCTGCGGCGAATGAGCGAA 
CAGGGTTTCTGCGAGGACGACGACTTCCCCCTGCAACCGCGCTCGGCCCTGCTTCCGCTGGTGCTGCAGCGG 
CGCCAGGGACAGCCGTTGTCGCTGGCGCTGGTGGCCATGGAACTGGCGCGGCGGCTGGACATTCCGCTGGTC 
GGAGTGAACTTCCCGGGACGCTTCCTGCTGCGCGTGCCGCAGGCCGACCATCTGCTCGACCCGGCCACCGGA 
CGGCGCCTCTATCCCACCGACTGCCGCGAACTGCTGCTGCGCCTGCAGGGGCCGAAGAGCGAGCTGCAGGCC 
GCCTACCTGAAGCAGGCCTCTCCCGGGGAAATCCTCCAGCGTCTGTCGCGCAACCTGCGACAACTGCACAGC 
GCCGTCGGCGAGCCGCTGGCCGCGCTGAAGGATGCCCAGCGGGTGATCGAACTCGGCCCGGTGGGCGCCGCC 
GACCACGAGGCCCGCGCCGGCCTCTATCGGCAACTGGATTGCCCGCAGGCGGAACGCTACGACCTGGAACGC 
GCGCTCTTGCTCAGCGACGATCCCACCGAGCAACTGCGCCTCGGCCAGCGCCTGGGCGAACTCGCCCCGCCG 
ACCGGCCGCGCCCTGCACTGA