ViewGene
Locus Name:
GeneID:
Location:

GeneID:2994
TrivialName: PA14_34280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34280
PAO1 Ortholog Locus:PA2349
Sequence Length:795
Protein Length:264
Start: 3048616
Stop: 3047822
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05737.1|AE004661_4 (AE004661) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 263/264 (99%), Positives = 263/264 (99%)
Sequence:
ATGCTGAACACCCTGAAAACCCTGAGCCTGGCCGTCCTCCTCGGCAGCGGCCCGGTCCAGGCCGCCGACGCC
CCGCTGAAGATCGGCACCACCGCCGCCTTCGCCCCGCCGCTGGAAGTCGCCGTGAGCGAAGCCGGCAAGCAG
GGACTGAAGGTCGAACTGGTCGAGTTCAGCGACTGGAACGCCCCCAACATCACCCTCGCCCAGGGCGACATC
GACGCCAACTACTTCCAGCACGTGCCCTTCCTGGAAAACGCCAACCGCGAAGGCGGCTTCCAGTTGAAGCCG
TTCGCGCCGGGGATCATCAACAACGTCGGGCTCTATTCGAAGCGCTACGCCAGCCTCGCAGAGTTGCCGGAA
GGCGCCAGCGTGGCCATCGCCAACGACCCGATCAATGGCGGCCGCGGCCTGCAACTGCTACAGAAGGCCGGC
CTGCTGAAGCTCAGGGACGGCGTCGGCTACAAGGCGACCCTCGACGATATCGTCGACAACCCGAAGGACATC
CGCATCACCGAGCTGGAGGCGGTGCAACTGGCGCGCGCCCTCGACGATTTCGACCTGGCCCAGGGCTACCCG
CACTACCTGCGCCTGGCCGGGACCATCGACCCGACCCGGGCGCTGCTGTTCGACGGGATCGACAACCGGGAA
TACGTGATCCAGTTCGTCACCCGCGGCGACTACCAGGACCGCGACGGCCGCCTGGCGCGCTTCGTCGACATC
TACCAGCATTCGCCGGTGGTCCGCGCCGCGTTGGACAAGGCCCATGGCACGCTGTACCAGCCGGGCTGGGAG
TGA
Translation:
MLNTLKTLSLAVLLGSGPVQAADAPLKIGTTAAFAPPLEVAVSEAGKQGLKVELVEFSDWNAPNITLAQGDI
DANYFQHVPFLENANREGGFQLKPFAPGIINNVGLYSKRYASLAELPEGASVAIANDPINGGRGLQLLQKAG
LLKLRDGVGYKATLDDIVDNPKDIRITELEAVQLARALDDFDLAQGYPHYLRLAGTIDPTRALLFDGIDNRE
YVIQFVTRGDYQDRDGRLARFVDIYQHSPVVRAALDKAHGTLYQPGWE*
AnnotationID:3002GeneID:2994
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:55
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, periplasmic binding protein
Cell Localization:()
Synonyms:metQ-l
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative D-methionine-binding lipoprotein MetQ
Functional Category Confidence Code:5
COGs:COG1464,pfam03180
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65853.1|AE016213_9 (AE016774) ABC transporter, periplasmic binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 266

 Score =  353 bits (905), Expect = 7e-97
 Identities = 178/256 (69%), Positives = 205/256 (80%), Gaps = 1/256 (0%)

>gb|AAO58613.1| (AE016874) D-methionine-binding lipoprotein MetQ [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 262

 Score =  346 bits (888), Expect = 7e-95
 Identities = 177/264 (67%), Positives = 206/264 (78%), Gaps = 3/264 (1%)








 
Structural Features:
COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/
surface antigen [Inorganic ion transport and metabolism]
CD-Length = 268 residues,  99.3% aligned
Score =  274 bits (702), Expect = 9e-75
Identities = 117/268 (43%), Positives = 155/268 (57%), Gaps = 7/268 (2%)

pfam03180, Lipoprotein_9, NLPA lipoprotein. This family of bacterial lipoproteins 
contains several antigenic members, that may be involved in bacterial virulence.
CD-Length = 237 residues, 100.0% aligned
Score =  255 bits (654), Expect = 3e-69
Identities = 111/240 (46%), Positives = 149/240 (62%), Gaps = 4/240 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5991




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23133




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32897




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2994_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2994
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4848
                           PA2349_tr
                           translation of PA2349
                           264
                           99.62
                           99.62
                           0
                           1353.0
     

     
     
138028
                           gb|AAG05737.1|AE004661_4
                           (AE004661) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           264
                           99.62
                           99.62
                           0
                           1353.0
     

     
     
138029
                           gb|AAN65853.1|AE016213_9
                           (AE016774) ABC transporter, periplasmic binding protein, putative [Pseudomonas putida KT2440]
                           267
                           67.79
                           77.90
                           4
                           906.0
     

     
     
138030
                           gb|AAO58613.1|
                           (AE016874) D-methionine-binding lipoprotein MetQ [Pseudomonas syringae pv. tomato str. DC3000]
                           265
                           66.79
                           77.73
                           4
                           892.0
     

     
     
138035
                           emb|CAE39006.1|
                           (BX640434) putative exported protein [Bordetella parapertussis]
                           269
                           42.00
                           57.24
                           9
                           501.0
     

     






      

          
GC ORFID: 45996How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2349Glimmer Score: 

          
Start: 1905300Stop: 1906094

          
Length: 795


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2349 translation of PA2349Homolog Bit Score 525.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3833 (ORF: BLASTX 347.0), t_PA5505 (ORF: BLASTX 150.0), t_PA2349 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAACACCCTGAAAACCCTGAGCCTGGCCGTCCTCCTCGGCAGCGGCCCGGTCCAGGCCGCCGACGCC 
CCGCTGAAGATCGGCACCACCGCCGCCTTCGCCCCGCCGCTGGAAGTCGCCGTGAGCGAAGCCGGCAAGCAG 
GGACTGAAGGTCGAACTGGTCGAGTTCAGCGACTGGAACGCCCCCAACATCACCCTCGCCCAGGGCGACATC 
GACGCCAACTACTTCCAGCACGTGCCCTTCCTGGAAAACGCCAACCGCGAAGGCGGCTTCCAGTTGAAGCCG 
TTCGCGCCGGGGATCATCAACAACGTCGGGCTCTATTCGAAGCGCTACGCCAGCCTCGCAGAGTTGCCGGAA 
GGCGCCAGCGTGGCCATCGCCAACGACCCGATCAATGGCGGCCGCGGCCTGCAACTGCTACAGAAGGCCGGC 
CTGCTGAAGCTCAGGGACGGCGTCGGCTACAAGGCGACCCTCGACGATATCGTCGACAACCCGAAGGACATC 
CGCATCACCGAGCTGGAGGCGGTGCAACTGGCGCGCGCCCTCGACGATTTCGACCTGGCCCAGGGCTACCCG 
CACTACCTGCGCCTGGCCGGGACCATCGACCCGACCCGGGCGCTGCTGTTCGACGGGATCGACAACCGGGAA 
TACGTGATCCAGTTCGTCACCCGCGGCGACTACCAGGACCGCGACGGCCGCCTGGCGCGCTTCGTCGACATC 
TACCAGCATTCGCCGGTGGTCCGCGCCGCGTTGGACAAGGCCCATGGCACGCTGTACCAGCCGGGCTGGGAG 
TGA