ViewGene
Locus Name:
GeneID:
Location:

GeneID:2993
TrivialName: PA14_45350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45350
PAO1 Ortholog Locus:PA1477
Sequence Length:759
Protein Length:252
Start: 4041144
Stop: 4040386
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04866.1|AE004577_1 (AE004577) heme exporter protein CcmC [Pseudomonas aeruginosa PAO1]
Identities = 252/252 (100%), Positives = 252/252 (100%)
Sequence:
ATGATGAATTGGACATGGTTTCACAAGCTTGGGTCGCCCAAGTGGTTCTACGAGATCAGCGGCCGCTGGCTG
CCCTGGTTCGCCGTGGCGGCGGCGCTGCTGATCGTCACCGGCTGCGTCTGGGGGCTGGCCTTCGCGCCGCCG
GACTACCAGCAGGGCAATAGCTTCCGCATCATCTATATCCATGTGCCGGCGGCCTTCCTCGCCCAGTCCTGC
TACGTCATGCTGGCCGTGGCCGGTGCCGTCGGGCTGATCTGGAAGATGAAGATCGCCGACGTGGCGGTGCAG
TGCGCCGCCCCCATCGGCGCCTGGATGACCTTCGTCGCGCTGCTTACCGGGGCCGTCTGGGGCAAGCCGACC
TGGGGCGCCTGGTGGGTCTGGGACGCGCGCCTGACGGCGATGCTGATCCTGCTTTTCCTCTATTTCGGCATC
ATCGCCCTCGGTCAGGCGATCAGTAACCGCGACAGCGCGGCCAAGGCCTGTGCCGTACTGGCCATCGTCGGC
GTGGTGAACATCCCGATCATCAAGTACTCGGTGGAGTGGTGGAACACCCTGCACCAGCCGGCCACCTTCACC
ATCACCGAGAAACCGGCGATGCCGGTGGAGATGTGGTTGCCGTTGCTGATCATGGTCCTCGGCTTCTATTGC
TTCTTCGCGGCCATGCTGCTGGTGCGCATGCGCCTGGAAGTGCTCAAGCGCGAGTCCCGCACCGCCTGGGCG
AAAGCCGAGGTGAAGGCCCTGGTGGAGAAGGCACGATGA
Translation:
MMNWTWFHKLGSPKWFYEISGRWLPWFAVAAALLIVTGCVWGLAFAPPDYQQGNSFRIIYIHVPAAFLAQSC
YVMLAVAGAVGLIWKMKIADVAVQCAAPIGAWMTFVALLTGAVWGKPTWGAWWVWDARLTAMLILLFLYFGI
IALGQAISNRDSAAKACAVLAIVGVVNIPIIKYSVEWWNTLHQPATFTITEKPAMPVEMWLPLLIMVLGFYC
FFAAMLLVRMRLEVLKRESRTAWAKAEVKALVEKAR*
AnnotationID:3001GeneID:2993
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 16:04:04
Gene Name:ccmC
Confidence Code:2
GeneProduct:heme exporter protein CcmC
Cell Localization:()
Synonyms:pfcyt1 cycZ helC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs: COG0755
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5989




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17012




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1477_CDS.cgi


    		




 
URL:

















    ReferenceID:23131




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2993
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4847
                           PA1477_tr
                           translation of PA1477
                           252
                           99.99
                           99.99
                           0
                           1352.0
     

     
     
137973
                           gb|AAG04866.1|AE004577_1
                           (AE004577) heme exporter protein CcmC [Pseudomonas aeruginosa PAO1]
                           252
                           99.99
                           99.99
                           0
                           1352.0
     

     
     
137974
                           gb|AAN69904.1|AE016629_6
                           (AE016790) heme ABC export system, permease protein CcmC [Pseudomonas putida KT2440]
                           255
                           80.78
                           88.62
                           3
                           1129.0
     

     
     
137975
                           emb|CAA10529.1|
                           (AJ131925) CcmC protein [Pseudomonas putida]
                           254
                           78.34
                           87.40
                           4
                           1103.0
     

     
     
137977
                           emb|CAA88015.1|
                           (Z47979) inner membrane protein [Pseudomonas fluorescens]
                           253
                           75.88
                           82.60
                           24
                           1032.0
     

     






      

          
GC ORFID: 45995How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1477Glimmer Score: 

          
Start: 912765Stop: 913523

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1477 translation of PA1477Homolog Bit Score 525.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2227 (ORF: BLASTX 419.0), t_PA1477 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGAATTGGACATGGTTTCACAAGCTTGGGTCGCCCAAGTGGTTCTACGAGATCAGCGGCCGCTGGCTG 
CCCTGGTTCGCCGTGGCGGCGGCGCTGCTGATCGTCACCGGCTGCGTCTGGGGGCTGGCCTTCGCGCCGCCG 
GACTACCAGCAGGGCAATAGCTTCCGCATCATCTATATCCATGTGCCGGCGGCCTTCCTCGCCCAGTCCTGC 
TACGTCATGCTGGCCGTGGCCGGTGCCGTCGGGCTGATCTGGAAGATGAAGATCGCCGACGTGGCGGTGCAG 
TGCGCCGCCCCCATCGGCGCCTGGATGACCTTCGTCGCGCTGCTTACCGGGGCCGTCTGGGGCAAGCCGACC 
TGGGGCGCCTGGTGGGTCTGGGACGCGCGCCTGACGGCGATGCTGATCCTGCTTTTCCTCTATTTCGGCATC 
ATCGCCCTCGGTCAGGCGATCAGTAACCGCGACAGCGCGGCCAAGGCCTGTGCCGTACTGGCCATCGTCGGC 
GTGGTGAACATCCCGATCATCAAGTACTCGGTGGAGTGGTGGAACACCCTGCACCAGCCGGCCACCTTCACC 
ATCACCGAGAAACCGGCGATGCCGGTGGAGATGTGGTTGCCGTTGCTGATCATGGTCCTCGGCTTCTATTGC 
TTCTTCGCGGCCATGCTGCTGGTGCGCATGCGCCTGGAAGTGCTCAAGCGCGAGTCCCGCACCGCCTGGGCG 
AAAGCCGAGGTGAAGGCCCTGGTGGAGAAGGCACGATGA