ViewGene

Locus Name:
GeneID:
Location:

GeneID:2992
TrivialName: PA14_50860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50860
PAO1 Ortholog Locus:PA1043
Sequence Length:810
Protein Length:269
Start: 4521921
Stop: 4521112
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04432.1|AE004536_11 (AE004536) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 266/269 (98%), Positives = 266/269 (98%)
Sequence:
ATGCGTAAGGCCATGCTCGGATTGTTCCTGGTCGTTCCCCTGGCCTGGGCTGGCGCCGCGTTTTCGGCCGAG
GCGCCGACGGCACGCCAGCAGGGTATCGGCGGAACCGTGAAGGTTCAGGCGAACTCGGTGATGCGCCTGCCC
AAGCGGGCCCAGGAGCTGCGCCTGCGCAGAGTGGAGATCGGCGAGGATGCCGCCCTGCTGATTCCGCTGGAG
GTCAGCGTCCTGCGCATCGAGGAACTGCACATGGCGAAGAACGCCCGGATCGGCGTGGCGCCGGGCGAGGAG
CGAATCAGCATCGAAGTCGTCAGCGGCCGCCTGGCCGACGGCAGCATCATTTCCGCGCCCGGCGCGACCGGC
ACCTTCCGGCAAAGCGCCGGTAACGGCCGCGACCTGACCTTGCGCCTGCAGGCGGTGGAGGTGGAAAGCCTG
CTGCTGGACGCCCGCGGTGGCGTCGGCGCGCCGGGTTACGATGGCCTGGACGGGGCTTCCGGCAAGGCCTCC
GGCTGCTTCTGGGGCAGCGCGCTGAAAGGTGGCGACGGCCAATCCGGAAGCGACGGCGGTCCGGGCGGGGCG
GGCGGTCGGATTCGTCTGGAAGTGCCGGGCGATTTTCCTCTGGAGCGCTTGCAAACCCGTCTGCAAGGCGGT
GTCGGCGGCGCCGGAGGCAAGGCCGGCAAACCGGGTGCGGCGGATAACGCCACCGGTTGCTGGATCTACTCG
GTGGATGCCGGTCGTGCGGGGCGCAGCGGAGAGGACGGCGCGAACGGCACCAACGGCAGCGACGGCAGCCTC
GACGTCGTGCGCTTCTGA
Translation:
MRKAMLGLFLVVPLAWAGAAFSAEAPTARQQGIGGTVKVQANSVMRLPKRAQELRLRRVEIGEDAALLIPLE
VSVLRIEELHMAKNARIGVAPGEERISIEVVSGRLADGSIISAPGATGTFRQSAGNGRDLTLRLQAVEVESL
LLDARGGVGAPGYDGLDGASGKASGCFWGSALKGGDGQSGSDGGPGGAGGRIRLEVPGDFPLERLQTRLQGG
VGGAGGKAGKPGAADNATGCWIYSVDAGRAGRSGEDGANGTNGSDGSLDVVRF*
AnnotationID:3000GeneID:2992
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 12:12:43
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1043
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:5987
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23129
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2992

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4846 PA1043_tr translation of PA1043 269 98.88 98.88 0 1352.0
137971 gb|AAG04432.1|AE004536_11 (AE004536) hypothetical protein PA1043 [Pseudomonas aeruginosa PAO1] 269 98.88 98.88 0 1352.0
137972 gb|AAO57580.1| (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 269 41.26 57.62 17 540.0
GC ORFID: 45994How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1043Glimmer Score:
Start: 431987Stop: 432796
Length: 810
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1043 translation of PA1043Homolog Bit Score 525.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6294 (ORF: BLASTX 203.0), t_PA1043 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTAAGGCCATGCTCGGATTGTTCCTGGTCGTTCCCCTGGCCTGGGCTGGCGCCGCGTTTTCGGCCGAG
GCGCCGACGGCACGCCAGCAGGGTATCGGCGGAACCGTGAAGGTTCAGGCGAACTCGGTGATGCGCCTGCCC
AAGCGGGCCCAGGAGCTGCGCCTGCGCAGAGTGGAGATCGGCGAGGATGCCGCCCTGCTGATTCCGCTGGAG
GTCAGCGTCCTGCGCATCGAGGAACTGCACATGGCGAAGAACGCCCGGATCGGCGTGGCGCCGGGCGAGGAG
CGAATCAGCATCGAAGTCGTCAGCGGCCGCCTGGCCGACGGCAGCATCATTTCCGCGCCCGGCGCGACCGGC
ACCTTCCGGCAAAGCGCCGGTAACGGCCGCGACCTGACCTTGCGCCTGCAGGCGGTGGAGGTGGAAAGCCTG
CTGCTGGACGCCCGCGGTGGCGTCGGCGCGCCGGGTTACGATGGCCTGGACGGGGCTTCCGGCAAGGCCTCC
GGCTGCTTCTGGGGCAGCGCGCTGAAAGGTGGCGACGGCCAATCCGGAAGCGACGGCGGTCCGGGCGGGGCG
GGCGGTCGGATTCGTCTGGAAGTGCCGGGCGATTTTCCTCTGGAGCGCTTGCAAACCCGTCTGCAAGGCGGT
GTCGGCGGCGCCGGAGGCAAGGCCGGCAAACCGGGTGCGGCGGATAACGCCACCGGTTGCTGGATCTACTCG
GTGGATGCCGGTCGTGCGGGGCGCAGCGGAGAGGACGGCGCGAACGGCACCAACGGCAGCGACGGCAGCCTC
GACGTCGTGCGCTTCTGA