ViewGene
Locus Name:
GeneID:
Location:

GeneID:2991
TrivialName: PA14_53820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53820
PAO1 Ortholog Locus:PA0807
Sequence Length:768
Protein Length:255
Start: 4772588
Stop: 4771821
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04196.1|AE004516_1 (AE004516) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/255 (100%), Positives = 255/255 (100%)
Sequence:
ATGCTGACCATCGACTACAACAGCTATCGCACCACTACCCCCTACGGCAAACGCGTGCGCTTCCTGGTGCTG
CACTACACCGCGCTCGACTTCGCCGCTTCGGTCAAGGCGCTGACCACCGGCGCCGCCAGCGCCCACTACCTG
ATCCCGGCGCCGCACGACCCCAGCTACAAGGCCGCCGGCTTCAAGGGCCAGCGCATCTTCAACCTGGTCGCC
GAGGAAGACCGCGCCTGGCACGCCGGCGTCAGCGGCTGGGCGCGCCGCGACAACCTCAACGACACTTCCATC
GGCATCGAGATCGTCAACCTCGCCCGCGACGACGACGGCGTGTTCACCTTCCCCGACTACGAGCGCTCGCAG
ATCAACGCACTCAAGCAACTGGCGAAGAACATCCTGCAGCGCTACCCGGACATGACCCCGAAGAACGTGGTC
GGCCACTCCGATATCGCCGTCGGGCGCAAGTCCGACCCGGGTCCGAAGCTGCCCTGGAAGGAACTCTACGAG
GCCGGTATCGGCGCCTGGTATGACGACGCCACCCGCGATCGCTATCGCGAAGGCTTCGAGCGCGACGGCTTG
CCGCCGCGCGCCGACCTGCTGGAGGCGTTCCGCCTGTACGGCTATGCGCTGCCGGCGACGGTCGACGACGCC
TACTTCGCCAGCCTGCTGCGCGCTTTCCAGATGCATTTCCGCCCGGAGAACTACGACGGCGCGCTGGATGTG
GAGACGGCGGCGATCCTCTACGCTCTGAACGAGAAATACCCGGCCTGA
Translation:
MLTIDYNSYRTTTPYGKRVRFLVLHYTALDFAASVKALTTGAASAHYLIPAPHDPSYKAAGFKGQRIFNLVA
EEDRAWHAGVSGWARRDNLNDTSIGIEIVNLARDDDGVFTFPDYERSQINALKQLAKNILQRYPDMTPKNVV
GHSDIAVGRKSDPGPKLPWKELYEAGIGAWYDDATRDRYREGFERDGLPPRADLLEAFRLYGYALPATVDDA
YFASLLRAFQMHFRPENYDGALDVETAAILYALNEKYPA*
AnnotationID:2999GeneID:2991
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 14:02:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0807
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3023, pfam01510
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3023, AmpD, Negative regulator of beta-lactamase expression. [defense]. Score: 269, 4e-73
pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase. Score: 94.3, 3e-20






   
Genomic Context:






   
Comment:


















    ReferenceID:5985




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23127




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2991
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4844
                           PA0807_tr
                           translation of PA0807
                           255
                           99.99
                           99.99
                           0
                           1351.0
     

     
     
137947
                           gb|AAG04196.1|AE004516_1
                           (AE004516) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           255
                           99.99
                           99.99
                           0
                           1351.0
     

     
     
137948
                           gb|AAM85412.1|AE013787_9
                           (AE013787) putative regulator [Yersinia pestis KIM]
                           255
                           59.60
                           71.76
                           1
                           793.0
     

     
     
137949
                           emb|CAC90504.1|
                           (AJ414149) probable N-acetylmuramoyl-L-alanine amidase [Yersinia pestis CO92]
                           255
                           59.60
                           71.76
                           1
                           793.0
     

     
     
137950
                           gb|AAQ60700.1|
                           (AE016920) probable N-acetylmuramoyl-L-alanine amidase [Chromobacterium violaceum ATCC 12472]
                           258
                           56.97
                           69.76
                           4
                           746.0
     

     






      

          
GC ORFID: 45993How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0807Glimmer Score: 

          
Start: 181319Stop: 182086

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0807 translation of PA0807Homolog Bit Score 525.0

          
Other Homologs:  t_PA5485 (ORF: BLASTX 156.0), t_PA0807 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACCATCGACTACAACAGCTATCGCACCACTACCCCCTACGGCAAACGCGTGCGCTTCCTGGTGCTG 
CACTACACCGCGCTCGACTTCGCCGCTTCGGTCAAGGCGCTGACCACCGGCGCCGCCAGCGCCCACTACCTG 
ATCCCGGCGCCGCACGACCCCAGCTACAAGGCCGCCGGCTTCAAGGGCCAGCGCATCTTCAACCTGGTCGCC 
GAGGAAGACCGCGCCTGGCACGCCGGCGTCAGCGGCTGGGCGCGCCGCGACAACCTCAACGACACTTCCATC 
GGCATCGAGATCGTCAACCTCGCCCGCGACGACGACGGCGTGTTCACCTTCCCCGACTACGAGCGCTCGCAG 
ATCAACGCACTCAAGCAACTGGCGAAGAACATCCTGCAGCGCTACCCGGACATGACCCCGAAGAACGTGGTC 
GGCCACTCCGATATCGCCGTCGGGCGCAAGTCCGACCCGGGTCCGAAGCTGCCCTGGAAGGAACTCTACGAG 
GCCGGTATCGGCGCCTGGTATGACGACGCCACCCGCGATCGCTATCGCGAAGGCTTCGAGCGCGACGGCTTG 
CCGCCGCGCGCCGACCTGCTGGAGGCGTTCCGCCTGTACGGCTATGCGCTGCCGGCGACGGTCGACGACGCC 
TACTTCGCCAGCCTGCTGCGCGCTTTCCAGATGCATTTCCGCCCGGAGAACTACGACGGCGCGCTGGATGTG 
GAGACGGCGGCGATCCTCTACGCTCTGAACGAGAAATACCCGGCCTGA