ViewGene
Locus Name:
GeneID:
Location:

GeneID:2990
TrivialName: PA14_13680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13680
PAO1 Ortholog Locus:PA3883
Sequence Length:831
Protein Length:276
Start: 1176155
Stop: 1175325
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07270.1|AE004805_8 (AE004805) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 271/276 (98%), Positives = 273/276 (98%)
Sequence:
ATGAGCCAACCCGTCGCCTTCGTCACCGGCTGCTCCAGCGGCATCGGCCGCGCCCTCGCCGACGCCTTCCAG
CGCGCCGGCTACCGGGTCTGGGCCAGCGCACGCAAGGAAGACGACGTGCGCGCCCTGGCCGAGGCCGGCTTC
CAGGCGGTGCAACTGGACGTCAACGACGCCGCCGCGCTGGCCCGTCTGGCCGAGGAGCTGGAAGTCGAAACC
GCCGGCCTCGACGTGCTGGTCAACAACGCCGGCTACGGCGCCATGGGTCCGCTGCTGGACGGCGGCGTCGAC
GCCATGCGCCGGCAGTTCGAGACCAACGTGTTCGCCGTGGTCGGCGTGACCCGCGCACTGTTCCCGCTACTG
AGGCGCAAGTCCGGCCTGGTGGTGAACGTCGGCAGCGTCTCCGGCGTGCTGGTCACGCCCTTCGCCGGCgcc
taCTGCGCCTCCAAGGCCGCGGTGCATGCGCTGAGCGATGCCCTGCGCCTGGAACTAGCACCGTTCGGCGTC
GAGGTGCTGGAAGTGCAGCCGGGCGCCATCGCCTCGAACTTCGGCGCCAGCGCCAGCCGCGAGATGGACAGC
GTGGTCGACGAACGCTCGCCCTGGTGGCCGTTGCGCCGGCAGATCCAGGCGCGCGCCGCGGCATCCCAGGAC
AATCCCACGCCCGCCGAAGACTTCGCCCGCCAGTTGCTCGCCGCCGTGCAGCGCCGTCCGCGCCCGCCGCTG
GTGCGCATCGGCAATGGCAGCCGGGCCCTGCCGGCGCTGGCCCGCTGGATGCCGCGCGGCCTGCTGGAGCGG
CTGCTGAAGAAGCGCTTCGGCCTCGACACGCGCCTCTGA
Translation:
MSQPVAFVTGCSSGIGRALADAFQRAGYRVWASARKEDDVRALAEAGFQAVQLDVNDAAALARLAEELEVET
AGLDVLVNNAGYGAMGPLLDGGVDAMRRQFETNVFAVVGVTRALFPLLRRKSGLVVNVGSVSGVLVTPFAGA
YCASKAAVHALSDALRLELAPFGVEVLEVQPGAIASNFGASASREMDSVVDERSPWWPLRRQIQARAAASQD
NPTPAEDFARQLLAAVQRRPRPPLVRIGNGSRALPALARWMPRGLLERLLKKRFGLDTRL*
AnnotationID:2998GeneID:2990
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 12:12:29
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA3883
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1209,COG0300,KOG1205
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG1209, 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases 
[Secondary metabolites biosynthesis, transport and catabolism]
CD-Length = 289 residues,  93.4% aligned
Score =  167 bits (423), Expect = 4e-42
Identities = 96/275 (34%), Positives = 143/275 (52%), Gaps = 9/275 (3%)

COG0300, DltE, Short-chain dehydrogenases of various substrate specificities 
CD-Length = 265 residues,  97.0% aligned
Score =  165 bits (418), Expect = 2e-41
Identities = 90/278 (32%), Positives = 138/278 (49%), Gaps = 29/278 (10%)

KOG1205, Predicted dehydrogenase 
[Secondary metabolites biosynthesis, transport and catabolism]
CD-Length = 282 residues,  76.6% aligned
Score =  162 bits (411), Expect = 1e-40
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 13/219 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5983




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31682




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2990_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2990
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4843
                           PA3883_tr
                           translation of PA3883
                           276
                           98.18
                           98.91
                           0
                           1355.0
     

     
     
137936
                           gb|AAG07270.1|AE004805_8
                           (AE004805) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           276
                           98.18
                           98.91
                           0
                           1355.0
     

     
     
137937
                           gb|AAO54750.1|
                           (AE016860) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           276
                           71.01
                           82.24
                           4
                           993.0
     

     
     
137938
                           gb|AAN66898.1|AE016318_5
                           (AE016778) oxidoreductase, short-chain dehydrogenase/reductase family [Pseudomonas putida KT2440]
                           276
                           69.92
                           80.79
                           6
                           967.0
     

     
     
137940
                           gb|AAQ60359.1|
                           (AE016919) probable oxidoreductase, short-chain dehydrogenase/reductase family [Chromobacterium violaceum ATCC 12472]
                           291
                           34.36
                           49.14
                           28
                           327.0
     

     






      

          
GC ORFID: 45992How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3883Glimmer Score: 

          
Start: 3777783Stop: 3778613

          
Length: 831


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3883 translation of PA3883Homolog Bit Score 526.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5005 (ORF: BLASTX 382.0), t_PA3883 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAACCCGTCGCCTTCGTCACCGGCTGCTCCAGCGGCATCGGCCGCGCCCTCGCCGACGCCTTCCAG 
CGCGCCGGCTACCGGGTCTGGGCCAGCGCACGCAAGGAAGACGACGTGCGCGCCCTGGCCGAGGCCGGCTTC 
CAGGCGGTGCAACTGGACGTCAACGACGCCGCCGCGCTGGCCCGTCTGGCCGAGGAGCTGGAAGTCGAAACC 
GCCGGCCTCGACGTGCTGGTCAACAACGCCGGCTACGGCGCCATGGGTCCGCTGCTGGACGGCGGCGTCGAC 
GCCATGCGCCGGCAGTTCGAGACCAACGTGTTCGCCGTGGTCGGCGTGACCCGCGCACTGTTCCCGCTACTG 
AGGCGCAAGTCCGGCCTGGTGGTGAACGTCGGCAGCGTCTCCGGCGTGCTGGTCACGCCCTTCGCCGGCgcc 
taCTGCGCCTCCAAGGCCGCGGTGCATGCGCTGAGCGATGCCCTGCGCCTGGAACTAGCACCGTTCGGCGTC 
GAGGTGCTGGAAGTGCAGCCGGGCGCCATCGCCTCGAACTTCGGCGCCAGCGCCAGCCGCGAGATGGACAGC 
GTGGTCGACGAACGCTCGCCCTGGTGGCCGTTGCGCCGGCAGATCCAGGCGCGCGCCGCGGCATCCCAGGAC 
AATCCCACGCCCGCCGAAGACTTCGCCCGCCAGTTGCTCGCCGCCGTGCAGCGCCGTCCGCGCCCGCCGCTG 
GTGCGCATCGGCAATGGCAGCCGGGCCCTGCCGGCGCTGGCCCGCTGGATGCCGCGCGGCCTGCTGGAGCGG 
CTGCTGAAGAAGCGCTTCGGCCTCGACACGCGCCTCTGA