ViewGene
Locus Name:
GeneID:
Location:

GeneID:2989
TrivialName: PA14_52850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52850
PAO1 Ortholog Locus:PA0883
Sequence Length:828
Protein Length:275
Start: 4686006
Stop: 4685179
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04272.1|AE004522_14 (AE004522) probable acyl-CoA lyase beta chain [Pseudomonas aeruginosa PAO1]
Identities = 272/275 (98%), Positives = 273/275 (99%)
Sequence:
ATGAACCGACAAATCGTGCGCAGCGCGCTGTTCGTCCCGGCGACCCGCCCGGAGCGGATCCCCAAGGCCCTT
GCCAGCGGCGCCGACCGGGTCATCGTCGACCTCGAGGATGCGGTGGAGGAGGGGCTGAAggTCGAGGCGCGG
GCCAATCTCCGGCGTTTCCTCGTCGATACGCCGGAAGCCCGGGTGCTGGTGCGGATCAACGCGGCGGAGCAT
CCCGGACATGCCGACGACCTGGCGCTGTGCCGCGACCACGCCGGAGTGATCGGCCTGCTCCTGCCGAAAGTG
GAGAGCGCCGCCCAGGTGCGCCACGCCGCCGTGGCCAGCGGCAAGCCGGTCTGGCCCATCGTCGAGAGTGCC
CGCGGCCTTGCCGCGCTGGGCGAGATCGCCGCCGCCGCGGGGGTCGAGCGGCTGTCCTTCGGCAGCCTCGAC
CTGGCCCTGGATCTCGATCTCAACAGCGGCAGCAACGCAGCCGAACAGATTCTCGGTCACGCCCGTTACGCG
CTGCTCCTGCAATCGCGCCTGGCAGGCCTGGCGCCGCCGCTGGACGGCGTCTACCCGGCGATCCAGAACCGT
GTCGGACTGGTCGAGGCAGTGCGCTTCGCTCGCGACATGGGCTTCGGCGGGTTGCTGTGCATCCATCCGAGC
CAGGTCGAGCCGATCCACCAGACATTGATGCCGAGTCTCGCGGAACTGGAGTGGGCGCGTCGGGTGGCAGAG
GCCGGCGCCTCCGGTGCCGGCGTCTTCGTGGTCGACGGCGAGATGGTCGACGCGCCGGTGCTGGGACGCGCG
CGACGCCTGCTGGAGCGGGCCGGGGAGGGTGGCTGA
Translation:
MNRQIVRSALFVPATRPERIPKALASGADRVIVDLEDAVEEGLKVEARANLRRFLVDTPEARVLVRINAAEH
PGHADDLALCRDHAGVIGLLLPKVESAAQVRHAAVASGKPVWPIVESARGLAALGEIAAAAGVERLSFGSLD
LALDLDLNSGSNAAEQILGHARYALLLQSRLAGLAPPLDGVYPAIQNRVGLVEAVRFARDMGFGGLLCIHPS
QVEPIHQTLMPSLAELEWARRVAEAGASGAGVFVVDGEMVDAPVLGRARRLLERAGEGG*
AnnotationID:2997GeneID:2989
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 15:03:45
Gene Name:
Confidence Code:3
GeneProduct:probable acyl-CoA lyase beta chain
Cell Localization:(1) Cytoplasmic
Synonyms:PA0883
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:probable acyl-S-ACP lyase
Functional Category Confidence Code:5
COGs:COG2301
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]
      CD-Length = 283 residues,  98.6% aligned
      Score =  211 bits (539), Expect = 2e-55






   
Genomic Context:






   
Comment:


















    ReferenceID:5981




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23123




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2989
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4842
                           PA0883_tr
                           translation of PA0883
                           275
                           98.90
                           99.27
                           0
                           1356.0
     

     
     
137927
                           gb|AAG04272.1|AE004522_14
                           (AE004522) probable acyl-CoA lyase beta chain [Pseudomonas aeruginosa PAO1]
                           275
                           98.90
                           99.27
                           0
                           1356.0
     

     
     
137928
                           emb|CAE34441.1|
                           (BX640449) putative citrate lyase beta subunit [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           280
                           58.57
                           69.28
                           6
                           762.0
     

     
     
137929
                           emb|CAE38927.1|
                           (BX640434) putative citrate lyase beta subunit [Bordetella parapertussis]
                           280
                           58.57
                           69.28
                           6
                           762.0
     

     
     
137933
                           emb|CAE35934.1|
                           (BX640424) conserved hypothetical protein [Bordetella parapertussis]
                           289
                           43.94
                           55.36
                           27
                           478.0
     

     






      

          
GC ORFID: 45991How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0883Glimmer Score: 

          
Start: 267901Stop: 268728

          
Length: 828


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0883 translation of PA0883Homolog Bit Score 526.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene297 (ORF: BLASTX 359.0), t_PA0883 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGACAAATCGTGCGCAGCGCGCTGTTCGTCCCGGCGACCCGCCCGGAGCGGATCCCCAAGGCCCTT 
GCCAGCGGCGCCGACCGGGTCATCGTCGACCTCGAGGATGCGGTGGAGGAGGGGCTGAAggTCGAGGCGCGG 
GCCAATCTCCGGCGTTTCCTCGTCGATACGCCGGAAGCCCGGGTGCTGGTGCGGATCAACGCGGCGGAGCAT 
CCCGGACATGCCGACGACCTGGCGCTGTGCCGCGACCACGCCGGAGTGATCGGCCTGCTCCTGCCGAAAGTG 
GAGAGCGCCGCCCAGGTGCGCCACGCCGCCGTGGCCAGCGGCAAGCCGGTCTGGCCCATCGTCGAGAGTGCC 
CGCGGCCTTGCCGCGCTGGGCGAGATCGCCGCCGCCGCGGGGGTCGAGCGGCTGTCCTTCGGCAGCCTCGAC 
CTGGCCCTGGATCTCGATCTCAACAGCGGCAGCAACGCAGCCGAACAGATTCTCGGTCACGCCCGTTACGCG 
CTGCTCCTGCAATCGCGCCTGGCAGGCCTGGCGCCGCCGCTGGACGGCGTCTACCCGGCGATCCAGAACCGT 
GTCGGACTGGTCGAGGCAGTGCGCTTCGCTCGCGACATGGGCTTCGGCGGGTTGCTGTGCATCCATCCGAGC 
CAGGTCGAGCCGATCCACCAGACATTGATGCCGAGTCTCGCGGAACTGGAGTGGGCGCGTCGGGTGGCAGAG 
GCCGGCGCCTCCGGTGCCGGCGTCTTCGTGGTCGACGGCGAGATGGTCGACGCGCCGGTGCTGGGACGCGCG 
CGACGCCTGCTGGAGCGGGCCGGGGAGGGTGGCTGA