ViewGene
Locus Name:
GeneID:
Location:

GeneID:2988
TrivialName: PA14_16740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16740
PAO1 Ortholog Locus:PA3682
Sequence Length:825
Protein Length:274
Start: 1433233
Stop: 1434057
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07070.1|AE004787_10 (AE004787) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 272/274 (99%), Positives = 274/274 (100%)
Sequence:
ATGACCAGCCAACGCCAACGCGCCGAACGTTTCCGCGACCTGCACCAGGGGCCCGGCATGCTGGTCCTGCCC
AATCCCTGGGATGCCGGTTCGGCGAAGATGCTCGCCAGCCTCGGCTTCGACGCCCTTGCCACTACCAGCGCC
GGCCTGGCGTTCTCTCTGGGCCGGCGCGATGCGGAAGGCGCGGTGAGCCGGACCGAGGCGCTGGAAAACGCC
CGGGCGATCGTCGCCGCCACCGATCTGCCGGTCGCCGCCGACCTGGAAAACGGCTACGGCGATGCTCCGCAA
GACTGCGCCACGACCATCCGCCTGGCCGCCGAGGCCGGCCTGGTCGGTGGTTCCATAGAGGATGCCAGCGGG
CGCGCCGGACAGCCCATCTATGAGTTCTCCGCCGCGCTGGAGCGGGTCGCTGCCGCGGTCGAGGCGGCCCGT
GCGTTGCCATTCCCGTTCACCCTCTGCGCCCGCGCGGAGAATTTCCTGCATGGTCGCGAGGATCTCGACGAC
ACCCTGCGGCGCCTGCGCGCCTATGCCGATGCCGGCGCCGATGTGCTCTACGCGCCTGGCTTGAACCGCCGC
GAACAGATCGTCGCGGTGCTCGAAGCGGTGGCACCGAAGCCGGTCAACGTACTGGTCGGTTCGCCGCGCCTG
GAGCTGTCGCTGGACGAGCTGGAAGCCCTCGGCGTCAAGCGCGTGAGCCTGGGCTCGAACCTTGCCCGGGTC
GCCTTCGGCGCTTTCCATGAGGCGGCGCAGGCGCTGGCGCGGCGCGACCTGGAAGCGACCCGTGCGGCGATG
CCTTTCGACCGTATCAACGACCTGTTCCGCTGA
Translation:
MTSQRQRAERFRDLHQGPGMLVLPNPWDAGSAKMLASLGFDALATTSAGLAFSLGRRDAEGAVSRTEALENA
RAIVAATDLPVAADLENGYGDAPQDCATTIRLAAEAGLVGGSIEDASGRAGQPIYEFSAALERVAAAVEAAR
ALPFPFTLCARAENFLHGREDLDDTLRRLRAYADAGADVLYAPGLNRREQIVAVLEAVAPKPVNVLVGSPRL
ELSLDELEALGVKRVSLGSNLARVAFGAFHEAAQALARRDLEATRAAMPFDRINDLFR*
AnnotationID:2996GeneID:2988
AnnotatorUID: diggins
Modification Date/Time: 2005-06-16 20:08:47
Gene Name:
Confidence Code:3
GeneProduct:putative carboxyvinyl-carboxyphosphonate phosphorylmutase
Cell Localization:()
Synonyms:PA3682
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2513
Secondary Functional Category(ies):central intermediary metabolism
EC Number:2.7.8.23
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67131.1|AE016342_3 (AE016779) carboxyvinyl-carboxyphosphonate phosphorylmutase,
           putative [Pseudomonas putida KT2440]
          Length = 276

 Score =  353 bits (905), Expect = 8e-97
 Identities = 187/278 (67%), Positives = 224/278 (80%), Gaps = 7/278 (2%)






 
Structural Features:
COG2513, PrpB, PEP phosphonomutase and related enzymes 
[Carbohydrate transport and metabolism]
CD-Length = 289 residues,  94.1% aligned
Score =  218 bits (556), Expect = 2e-57
Identities = 100/278 (35%), Positives = 133/278 (47%), Gaps = 14/278 (5%)









   
Genomic Context:






   
Comment:


















    ReferenceID:5979




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23121




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31863




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2988_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2988
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4841
                           PA3682_tr
                           translation of PA3682
                           274
                           99.27
                           99.99
                           0
                           1358.0
     

     
     
137917
                           gb|AAG07070.1|AE004787_10
                           (AE004787) hypothetical protein PA3682 [Pseudomonas aeruginosa PAO1]
                           274
                           99.27
                           99.99
                           0
                           1358.0
     

     
     
137918
                           gb|AAN67131.1|AE016342_3
                           (AE016779) carboxyvinyl-carboxyphosphonate phosphorylmutase, putative [Pseudomonas putida KT2440]
                           279
                           67.02
                           80.28
                           8
                           913.0
     

     
     
137919
                           emb|CAD15150.1|
                           (AL646064) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           287
                           56.79
                           66.89
                           21
                           732.0
     

     
     
137920
                           emb|CAC46928.1|
                           (AL591790) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           279
                           53.40
                           68.45
                           8
                           678.0
     

     






      

          
GC ORFID: 45990How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3682Glimmer Score: 

          
Start: 3520704Stop: 3519880

          
Length: 825


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3682 translation of PA3682Homolog Bit Score 527.0

          
Other Homologs:  t_PA3682 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGCCAACGCCAACGCGCCGAACGTTTCCGCGACCTGCACCAGGGGCCCGGCATGCTGGTCCTGCCC 
AATCCCTGGGATGCCGGTTCGGCGAAGATGCTCGCCAGCCTCGGCTTCGACGCCCTTGCCACTACCAGCGCC 
GGCCTGGCGTTCTCTCTGGGCCGGCGCGATGCGGAAGGCGCGGTGAGCCGGACCGAGGCGCTGGAAAACGCC 
CGGGCGATCGTCGCCGCCACCGATCTGCCGGTCGCCGCCGACCTGGAAAACGGCTACGGCGATGCTCCGCAA 
GACTGCGCCACGACCATCCGCCTGGCCGCCGAGGCCGGCCTGGTCGGTGGTTCCATAGAGGATGCCAGCGGG 
CGCGCCGGACAGCCCATCTATGAGTTCTCCGCCGCGCTGGAGCGGGTCGCTGCCGCGGTCGAGGCGGCCCGT 
GCGTTGCCATTCCCGTTCACCCTCTGCGCCCGCGCGGAGAATTTCCTGCATGGTCGCGAGGATCTCGACGAC 
ACCCTGCGGCGCCTGCGCGCCTATGCCGATGCCGGCGCCGATGTGCTCTACGCGCCTGGCTTGAACCGCCGC 
GAACAGATCGTCGCGGTGCTCGAAGCGGTGGCACCGAAGCCGGTCAACGTACTGGTCGGTTCGCCGCGCCTG 
GAGCTGTCGCTGGACGAGCTGGAAGCCCTCGGCGTCAAGCGCGTGAGCCTGGGCTCGAACCTTGCCCGGGTC 
GCCTTCGGCGCTTTCCATGAGGCGGCGCAGGCGCTGGCGCGGCGCGACCTGGAAGCGACCCGTGCGGCGATG 
CCTTTCGACCGTATCAACGACCTGTTCCGCTGA