ViewGene

Locus Name:
GeneID:
Location:

GeneID:2987
TrivialName: PA14_20140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20140
PAO1 Ortholog Locus:PA3397
Sequence Length:777
Protein Length:258
Start: 1735930
Stop: 1736706
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06785.1|AE004761_1 (AE004761) ferredoxin--NADP+ reductase [Pseudomonas aeruginosa PAO1]
Identities = 258/258 (100%), Positives = 258/258 (100%)
Sequence:
ATGAGCAATCTGTACACCGAGCGCGTTCTCAGCGTGCACCACTGGAACGACACCCTGTTCAGCTTCAAGACC
ACCCGCAACCCGGGTCTGCGCTTCAAGACCGGCCAGTTCGTGATGATCGGCCTGGAAGTCGACGGTCGCCCG
CTGATGCGCGCCTACAGCATTGCCAGCCCGAACTACGAAGAGCACCTGGAGTTCTTCAGCATCAAGGTCCCG
GACGGCCCGCTGACCTCGCGCCTGCAACACCTGAAGGAAGGCGACGAGCTGATGGTCAGCCGCAAGCCGACC
GGCACCCTGGTGCACGACGACCTGCTGCCCGGCAAGCACCTCTACCTGCTCAGCACCGGCACCGGCATGGCG
CCCTTCCTCAGCGTGATCCAGGACCCGGAAACCTACGAGCGCTACGAGAAGGTGATCCTGGTCCACGGCGTG
CGCTGGGTCAGCGAACTGGCCTACGCCGACTTCATCACCAAGGTCCTGCCGGAACACGAGTACTTCGGCGAC
CAGGTGAAAGAGAAGCTGATCTACTACCCGCTGGTGACCCGCGAGCCGTTCCGCAATCAGGGCCGCCAGACC
GACCTGATGCGCAGCGGCAAGCTGTTCGAGGACATCGGCCTGCCGCCGATGAATCCGCAGGACGACCGTGCG
ATGATCTGCGGCAGCCCGAGCATGCTGGAAGAGACCAGCGCCGTGCTCGACAGCTTCGGCCTGAAGATCTCG
CCGCGCATGGGCGAGCCGGGCGACTACCTGATCGAGCGCGCCTTCGTCGAGAAGTAG
Translation:
MSNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVP
DGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGV
RWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRA
MICGSPSMLEETSAVLDSFGLKISPRMGEPGDYLIERAFVEK*
AnnotationID:2995GeneID:2987
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 09:09:03
Gene Name:fpr
Confidence Code:2
GeneProduct:ferredoxin--NADP+ reductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:NADPH:ferredoxin reductase
Functional Category Confidence Code:5
COGs:COG1018
Secondary Functional Category(ies):energy metabolism
EC Number:1.18.1.2
Status:ACTIVE
Pathway:
Homology:
>gb|AAA83029.1| (L36319) NADPH:ferredoxin reductase [Azotobacter vinelandii]
          Length = 258

 Score =  454 bits (1169), Expect = e-127
 Identities = 221/258 (85%), Positives = 237/258 (91%)

>emb|CAE38269.1| (BX640432) ferredoxin--NADP reductase [Bordetella parapertussis]
          Length = 258

 Score =  386 bits (992), Expect = e-107
 Identities = 186/258 (72%), Positives = 215/258 (83%)

>gb|AAM40711.1| (AE012241) ferredoxin-NADP reductase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 259

 Score =  338 bits (868), Expect = 1e-92
 Identities = 158/252 (62%), Positives = 200/252 (79%)
Structural Features:
COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 
[Energy production and conversion]
CD-Length = 266 residues,  99.6% aligned
Score =  208 bits (531), Expect = 5e-55
Identities = 88/268 (32%), Positives = 124/268 (46%), Gaps = 16/268 (5%)

Genomic Context:
Comment:
ReferenceID:5977
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23119
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32166
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2987_cdd.html
URL:
ReferenceID:34066
Author/Investigator(s): Isas JM, Yannone SM, Burgess BK.
Title: Azotobacter vinelandii NADPH:ferredoxin reductase cloning, sequencing, and overexpression.
PubMed: 7673160
MedLine:
Source:
J Biol Chem. 1995 Sep 8;270(36):21258-63.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7673160
ReferenceID:34067
Author/Investigator(s): Bianchi V, Reichard P, Eliasson R, Pontis E, Krook M, Jornvall H, Haggard-Ljungquist E.
Title: Escherichia coli ferredoxin NADP+ reductase: activation of E. coli anaerobic ribonucleotide reduction, cloning of the gene (fpr), and overexpression of the protein.
PubMed: 8449868
MedLine:
Source:
J Bacteriol. 1993 Mar;175(6):1590-5.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8449868
Homologs By Global Alignment
Gene ID:2987

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4839 PA3397_tr translation of PA3397 258 99.99 99.99 0 1358.0
137885 gb|AAG06785.1|AE004761_1 (AE004761) ferredoxin--NADP+ reductase [Pseudomonas aeruginosa PAO1] 258 99.99 99.99 0 1358.0
137886 gb|AAA83029.1| (L36319) NADPH:ferredoxin reductase [Azotobacter vinelandii] 258 85.65 91.86 0 1169.0
137887 gb|AAN67259.1|AE016352_12 (AE016780) ferredoxin--NADP reductase [Pseudomonas putida KT2440] 259 83.39 93.43 1 1149.0
137888 gb|AAO57481.1| (AE016870) ferredoxin--NADP reductase [Pseudomonas syringae pv. tomato str. DC3000] 259 80.30 92.66 1 1120.0
GC ORFID: 45989How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3397Glimmer Score:
Start: 3218002Stop: 3217226
Length: 777
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3397 translation of PA3397Homolog Bit Score 527.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4666 (ORF: BLASTX 434.0), t_PA4615 (ORF: BLASTX 180.0), t_PA3397 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAATCTGTACACCGAGCGCGTTCTCAGCGTGCACCACTGGAACGACACCCTGTTCAGCTTCAAGACC
ACCCGCAACCCGGGTCTGCGCTTCAAGACCGGCCAGTTCGTGATGATCGGCCTGGAAGTCGACGGTCGCCCG
CTGATGCGCGCCTACAGCATTGCCAGCCCGAACTACGAAGAGCACCTGGAGTTCTTCAGCATCAAGGTCCCG
GACGGCCCGCTGACCTCGCGCCTGCAACACCTGAAGGAAGGCGACGAGCTGATGGTCAGCCGCAAGCCGACC
GGCACCCTGGTGCACGACGACCTGCTGCCCGGCAAGCACCTCTACCTGCTCAGCACCGGCACCGGCATGGCG
CCCTTCCTCAGCGTGATCCAGGACCCGGAAACCTACGAGCGCTACGAGAAGGTGATCCTGGTCCACGGCGTG
CGCTGGGTCAGCGAACTGGCCTACGCCGACTTCATCACCAAGGTCCTGCCGGAACACGAGTACTTCGGCGAC
CAGGTGAAAGAGAAGCTGATCTACTACCCGCTGGTGACCCGCGAGCCGTTCCGCAATCAGGGCCGCCAGACC
GACCTGATGCGCAGCGGCAAGCTGTTCGAGGACATCGGCCTGCCGCCGATGAATCCGCAGGACGACCGTGCG
ATGATCTGCGGCAGCCCGAGCATGCTGGAAGAGACCAGCGCCGTGCTCGACAGCTTCGGCCTGAAGATCTCG
CCGCGCATGGGCGAGCCGGGCGACTACCTGATCGAGCGCGCCTTCGTCGAGAAGTAG