ViewGene
Locus Name:
GeneID:
Location:

GeneID:2985
TrivialName: PA14_43820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43820
PAO1 Ortholog Locus:PA1599
Sequence Length:783
Protein Length:260
Start: 3902362
Stop: 3901580
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04988.1|AE004588_1 (AE004588) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 260/260 (100%), Positives = 260/260 (100%)
Sequence:
ATGCCGCAAACGGGACAAGAACGCGACCTGCCGCGATTCCGCAGCCTGCCCTGCGCGGTGTATCTGCGCGCC
TTCGAGATGCCCGCCGGGCACCGGGTGGAGATGCACGACCACCCCTGGGGCCAACTGATGTACGCCGCCAGC
GGCACTTTGCGCGCCAGCACCGAGCGGCACAGCTATCTGGTGCCGGCGCAGCGGGCGCTGTGGATTCCGCCG
GGCGTCCGGCACGCCGCGGAGGCTTGCAACCCTGTGCTGTTCCGCAGTCTCTACCTGGATCGTTCGCTGCCC
GGCGGTTGCCGGGTACTGGAGGTGTCCGGCCTGCTGCGCGAACTGTTGCTGCGGGCGGCGGAATTTCCCCGT
GAATATCCGCCGGGTGGCGAGGCCGAGCGTCTCATGCAGGTGGTCGCCGATGAGGTCGGGCGCCTTCGCGAG
GCGCCGCTGAACCTGCCGTTGCCTGGCGACCCGCGCTTGCGCCGGATCACCGACGCGCTACAGGCGGATCCC
GCCGATCCGCGCGGCATCTCGGATTGGGCGGGACTGGTGGGGGCTTCCCGACGGACCCTGGCGCGGCTGTTC
CGCGAGCAGACCCAGTTGTCGTTTCGCGAGTGGCGCCAGCGCCTGCGTCTGCTCAACGCGGTCGCCGCGCTG
GAGGAGGGCGCCAGCGTGACGCGGGTGGCCAGCGACCTTGGCTACGACTCCACCTCGGCGTTCATCAGCCTG
TTCCAGCGTCATTTCGGCCAGACCCCCGGTTGCTTCGCCCGCTCCCTGCGCTTGCCCAACTGA
Translation:
MPQTGQERDLPRFRSLPCAVYLRAFEMPAGHRVEMHDHPWGQLMYAASGTLRASTERHSYLVPAQRALWIPP
GVRHAAEACNPVLFRSLYLDRSLPGGCRVLEVSGLLRELLLRAAEFPREYPPGGEAERLMQVVADEVGRLRE
APLNLPLPGDPRLRRITDALQADPADPRGISDWAGLVGASRRTLARLFREQTQLSFREWRQRLRLLNAVAAL
EEGASVTRVASDLGYDSTSAFISLFQRHFGQTPGCFARSLRLPN*
AnnotationID:2993GeneID:2985
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 15:03:47
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1599
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66210.1|AE016249_2 (AE016776) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 259

 Score =  195 bits (495), Expect = 2e-49
 Identities = 110/255 (43%), Positives = 141/255 (55%), Gaps = 5/255 (1%)








 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  96.4% aligned
Score = 77.2 bits (190), Expect = 2e-15
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5973




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23115




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37274




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2985_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2985
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4833
                           PA1599_tr
                           translation of PA1599
                           260
                           99.99
                           99.99
                           0
                           1357.0
     

     
     
137872
                           gb|AAG04988.1|AE004588_1
                           (AE004588) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           260
                           99.99
                           99.99
                           0
                           1357.0
     

     
     
4834
                           PA0163_tr
                           translation of PA0163
                           269
                           42.75
                           54.64
                           13
                           507.0
     

     
     
137873
                           gb|AAG03553.1|AE004454_5
                           (AE004454) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           269
                           42.75
                           54.64
                           13
                           507.0
     

     
     
137874
                           gb|AAN66210.1|AE016249_2
                           (AE016776) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           265
                           42.26
                           54.33
                           11
                           499.0
     

     






      

          
GC ORFID: 45987How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1599Glimmer Score: 

          
Start: 1051547Stop: 1052329

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1599 translation of PA1599Homolog Bit Score 527.0

          
Other Homologs:  t_PA0163 (ORF: BLASTX 197.0), psyr_15may02_Scaffold2_revised_gene3483 (ORF: BLASTX 196.0), t_PA3830 (ORF: BLASTX 177.0), t_PA3927 (ORF: BLASTX 174.0), t_PA1109 (ORF: BLASTX 155.0)

          
GC ORF Sequence

           
ATGCCGCAAACGGGACAAGAACGCGACCTGCCGCGATTCCGCAGCCTGCCCTGCGCGGTGTATCTGCGCGCC 
TTCGAGATGCCCGCCGGGCACCGGGTGGAGATGCACGACCACCCCTGGGGCCAACTGATGTACGCCGCCAGC 
GGCACTTTGCGCGCCAGCACCGAGCGGCACAGCTATCTGGTGCCGGCGCAGCGGGCGCTGTGGATTCCGCCG 
GGCGTCCGGCACGCCGCGGAGGCTTGCAACCCTGTGCTGTTCCGCAGTCTCTACCTGGATCGTTCGCTGCCC 
GGCGGTTGCCGGGTACTGGAGGTGTCCGGCCTGCTGCGCGAACTGTTGCTGCGGGCGGCGGAATTTCCCCGT 
GAATATCCGCCGGGTGGCGAGGCCGAGCGTCTCATGCAGGTGGTCGCCGATGAGGTCGGGCGCCTTCGCGAG 
GCGCCGCTGAACCTGCCGTTGCCTGGCGACCCGCGCTTGCGCCGGATCACCGACGCGCTACAGGCGGATCCC 
GCCGATCCGCGCGGCATCTCGGATTGGGCGGGACTGGTGGGGGCTTCCCGACGGACCCTGGCGCGGCTGTTC 
CGCGAGCAGACCCAGTTGTCGTTTCGCGAGTGGCGCCAGCGCCTGCGTCTGCTCAACGCGGTCGCCGCGCTG 
GAGGAGGGCGCCAGCGTGACGCGGGTGGCCAGCGACCTTGGCTACGACTCCACCTCGGCGTTCATCAGCCTG 
TTCCAGCGTCATTTCGGCCAGACCCCCGGTTGCTTCGCCCGCTCCCTGCGCTTGCCCAACTGA