ViewGene
Locus Name:
GeneID:
Location:

GeneID:2984
TrivialName: PA14_50110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50110
PAO1 Ortholog Locus:PA1103
Sequence Length:807
Protein Length:268
Start: 4454706
Stop: 4453900
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04492.1|AE004540_12 (AE004540) probable flagellar assembly protein [Pseudomonas aeruginosa PAO1]
Identities = 267/268 (99%), Positives = 267/268 (99%)
Sequence:
GTGGTCCCCCACGACAAGGACAAAGACAATCCCAGCGAACTGATCCGCGGCAAGGACGTGGCGGCCTTCGGC
CTCTGGTCGTTGCCGAGCTTCGACGAGCCGCGCGACGAGCCGGCCGTTGCCGCGCCGCAGGTGCCCGCGGTC
GCCGAACCCGCGCCGGCGCCGGCGGCGGTGGAAGAGGTCGAGCTGGAGACCGTCAAGCCGCCGACGCTGGAG
GAGATCGAGGCGATCCGCCAGGACGCCTACAATGAAGGTTTCGCCACCGGCGAGCGCGACGGTTTCCACGCC
GGCCAGTTGAAGGCGCGGCAGGAAGCCGAGGAGGCGCTGAAGGAGCGCCTGCAAAGTCTCGAGCGTCTGATG
ACGCAGCTCCTGGAACCCATCGCCGAGCAGGACGCCCTGATCGAGCAGGGCATGGTCAACCTGGTCAACCAC
GTTGCCCGCCAGGTGATCCAGCGCGAACTGCACATGGACTCCAGCCATGTCCGCCAGGTCCTGCGCGAGGCT
CTGAAGCTGCTGCCGATGGGCGCGGCGAACATCCGTATCCATGTTAACCCGCAGGACTTCGAGCGGGTCAAG
GCGCTGCGCGAGCGCCACGAAGAGAGCTGGCGGATTCTCGAGGACGATTCGTTGCTGCCCGGCGGCTGCCGC
ATCGAGACCGAGCACAGTCGCATCGACGCGACCATCGAGACGCGCCTGGCGCAGGCAGTGAAGCAACTGTTC
GAGCAACAGCGCGAACAGGCGACCCATCCGCTGGCCAGCGACATCCGGATCGACCTCGACGCCCCCGGAGAC
GTCGATGCGCCTTGA
Translation:
MVPHDKDKDNPSELIRGKDVAAFGLWSLPSFDEPRDEPAVAAPQVPAVAEPAPAPAAVEEVELETVKPPTLE
EIEAIRQDAYNEGFATGERDGFHAGQLKARQEAEEALKERLQSLERLMTQLLEPIAEQDALIEQGMVNLVNH
VARQVIQRELHMDSSHVRQVLREALKLLPMGAANIRIHVNPQDFERVKALRERHEESWRILEDDSLLPGGCR
IETEHSRIDATIETRLAQAVKQLFEQQREQATHPLASDIRIDLDAPGDVDAP*
AnnotationID:2992GeneID:2984
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 12:12:57
Gene Name:
Confidence Code:3
GeneProduct:probable flagellar assembly protein
Cell Localization:()
Synonyms:PA1103, fliH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1317, pfam02108
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly
Homology:






 
Structural Features:
COG1317, FliH, Flagellar biosynthesis/type III secretory pathway protein.
       CD-Length = 234 residues,  98.7% aligned
       Score =  138 bits (348), Expect = 9e-34
pfam02108, FliH, Flagellar assembly protein FliH. Score: 75.7, 
6e-15






   
Genomic Context:
fliFGHI (Ecoli)






   
Comment:


















    ReferenceID:14715




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23113




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2984
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4832
                           PA1103_tr
                           translation of PA1103
                           268
                           99.62
                           99.62
                           0
                           1358.0
     

     
     
137869
                           gb|AAG04492.1|AE004540_12
                           (AE004540) probable flagellar assembly protein [Pseudomonas aeruginosa PAO1]
                           268
                           99.25
                           99.62
                           0
                           1355.0
     

     
     
137870
                           gb|AAN69945.1|AE016633_3
                           (AE016790) flagellar assembly protein FliH [Pseudomonas putida KT2440]
                           277
                           62.09
                           75.09
                           23
                           854.0
     

     
     
137871
                           gb|AAO55478.1|
                           (AE016862) flagellar assembly protein Flih, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           283
                           55.12
                           70.31
                           26
                           788.0
     

     






      

          
GC ORFID: 45986How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1103Glimmer Score: 

          
Start: 499202Stop: 500008

          
Length: 807


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1103 translation of PA1103Homolog Bit Score 527.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7920 (ORF: BLASTX 301.0), t_PA1103 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTCCCCCACGACAAGGACAAAGACAATCCCAGCGAACTGATCCGCGGCAAGGACGTGGCGGCCTTCGGC 
CTCTGGTCGTTGCCGAGCTTCGACGAGCCGCGCGACGAGCCGGCCGTTGCCGCGCCGCAGGTGCCCGCGGTC 
GCCGAACCCGCGCCGGCGCCGGCGGCGGTGGAAGAGGTCGAGCTGGAGACCGTCAAGCCGCCGACGCTGGAG 
GAGATCGAGGCGATCCGCCAGGACGCCTACAATGAAGGTTTCGCCACCGGCGAGCGCGACGGTTTCCACGCC 
GGCCAGTTGAAGGCGCGGCAGGAAGCCGAGGAGGCGCTGAAGGAGCGCCTGCAAAGTCTCGAGCGTCTGATG 
ACGCAGCTCCTGGAACCCATCGCCGAGCAGGACGCCCTGATCGAGCAGGGCATGGTCAACCTGGTCAACCAC 
GTTGCCCGCCAGGTGATCCAGCGCGAACTGCACATGGACTCCAGCCATGTCCGCCAGGTCCTGCGCGAGGCT 
CTGAAGCTGCTGCCGATGGGCGCGGCGAACATCCGTATCCATGTTAACCCGCAGGACTTCGAGCGGGTCAAG 
GCGCTGCGCGAGCGCCACGAAGAGAGCTGGCGGATTCTCGAGGACGATTCGTTGCTGCCCGGCGGCTGCCGC 
ATCGAGACCGAGCACAGTCGCATCGACGCGACCATCGAGACGCGCCTGGCGCAGGCAGTGAAGCAACTGTTC 
GAGCAACAGCGCGAACAGGCGACCCATCCGCTGGCCAGCGACATCCGGATCGACCTCGACGCCCCCGGAGAC 
GTCGATGCGCCTTGA