ViewGene
Locus Name:
GeneID:
Location:

GeneID:2983
TrivialName: PA14_54010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54010
PAO1 Ortholog Locus:PA0791
Sequence Length:789
Protein Length:262
Start: 4790829
Stop: 4790041
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04180.1|AE004514_3 (AE004514) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 260/262 (99%), Positives = 261/262 (99%)
Sequence:
ATGCGCAACGCTTCCATCGAGCAGTACGACGCCACGCCCCGGGCCGTGGTGGCCATGGGTACCGACTATCCC
GACGGCTACCTGCTGCCGCGCCATCGGCACCGTCGCGCGCAATTGCTGTACGGTGCCAGCGGAGTGATGCAG
GTGCGTACCGGCGACGCCGGCTGGGTGGTGCCGCCACAGCGCGCGGTGTGGATTCCGCCGGGCGTCGAGCAT
GAGGTGCGAATGCTCGGGGTGAGCACCCGCAGCCTGTACATCGAGCCCGGCAGCGCCACGGCGATGCCGGCG
TACTGCCAGGTGCTGGCGGTGTCGCCGTTGCTGCGGCAACTGTTGCTGGCGGCGGTGGACATGCCCCTGGAA
TACGACACCGAAGGTCGCGACGGCGCGCTGGCGACGCTGTTGCTCCATGAGCTGGCGGCGGCCGAGACGCTG
CCGCTGCACGTGCCCTTGCCGCCCGAGCCGCGCTGGCTGGCGCTTTGCGAGGCGTTCCTCGTCGAGCCCGAC
ATCCGCGCCAGCGCCGAGCGCTGGGCCGGGCTGCTGCATACCAGCCTGCGCAGTTTCAACCGCACCTTCCGT
CGCTACACCGGCCTCAGCTTCGGGGCCTGGAAGCAACGCGCCTGCGTGGTGCAGGCACTGGCGCGGCTGGCC
GGCGGCGAAACGGTCACCGCCATCGCCCTGGACTGCGGCTACCAGAGCCCGGCAGCCTTCTCGACCATGTTC
CGCCGGGTCCTCGGCCAGCCGCCCAGCGCCTTCCAGGCGGGCGCGCTCAGATCGCCAGGAGGTCCATGA
Translation:
MRNASIEQYDATPRAVVAMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVWIPPGVEH
EVRMLGVSTRSLYIEPGSATAMPAYCQVLAVSPLLRQLLLAAVDMPLEYDTEGRDGALATLLLHELAAAETL
PLHVPLPPEPRWLALCEAFLVEPDIRASAERWAGLLHTSLRSFNRTFRRYTGLSFGAWKQRACVVQALARLA
GGETVTAIALDCGYQSPAAFSTMFRRVLGQPPSAFQAGALRSPGGP*
AnnotationID:2991GeneID:2983
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 15:03:39
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0791
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins. Score: 77.2, 4e-15
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.  Score: 69.1, 1e-12







   
Genomic Context:






   
Comment:


















    ReferenceID:5969




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23111




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2983
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4829
                           PA0791_tr
                           translation of PA0791
                           262
                           99.23
                           99.61
                           0
                           1357.0
     

     
     
137847
                           gb|AAG04180.1|AE004514_3
                           (AE004514) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           262
                           99.23
                           99.61
                           0
                           1357.0
     

     
     
137848
                           emb|CAC44675.1|
                           (AL939131) putative transcriptional regulator [Streptomyces coelicolor A3(2)]
                           262
                           48.09
                           59.16
                           3
                           599.0
     

     
     
137855
                           gb|AAQ58475.1|
                           (AE016912) probable transcriptional regulator, AraC/XylS family [Chromobacterium violaceum ATCC 12472]
                           266
                           43.60
                           56.39
                           13
                           525.0
     

     
     
137851
                           emb|CAE40667.1|
                           (BX640411) probable transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           272
                           41.17
                           56.61
                           13
                           555.0
     

     






      

          
GC ORFID: 45985How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0791Glimmer Score: 

          
Start: 163078Stop: 163866

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0791 translation of PA0791Homolog Bit Score 527.0

          
Other Homologs:  t_PA1235 (ORF: BLASTX 191.0), t_PA3927 (ORF: BLASTX 185.0), t_PA0791 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAACGCTTCCATCGAGCAGTACGACGCCACGCCCCGGGCCGTGGTGGCCATGGGTACCGACTATCCC 
GACGGCTACCTGCTGCCGCGCCATCGGCACCGTCGCGCGCAATTGCTGTACGGTGCCAGCGGAGTGATGCAG 
GTGCGTACCGGCGACGCCGGCTGGGTGGTGCCGCCACAGCGCGCGGTGTGGATTCCGCCGGGCGTCGAGCAT 
GAGGTGCGAATGCTCGGGGTGAGCACCCGCAGCCTGTACATCGAGCCCGGCAGCGCCACGGCGATGCCGGCG 
TACTGCCAGGTGCTGGCGGTGTCGCCGTTGCTGCGGCAACTGTTGCTGGCGGCGGTGGACATGCCCCTGGAA 
TACGACACCGAAGGTCGCGACGGCGCGCTGGCGACGCTGTTGCTCCATGAGCTGGCGGCGGCCGAGACGCTG 
CCGCTGCACGTGCCCTTGCCGCCCGAGCCGCGCTGGCTGGCGCTTTGCGAGGCGTTCCTCGTCGAGCCCGAC 
ATCCGCGCCAGCGCCGAGCGCTGGGCCGGGCTGCTGCATACCAGCCTGCGCAGTTTCAACCGCACCTTCCGT 
CGCTACACCGGCCTCAGCTTCGGGGCCTGGAAGCAACGCGCCTGCGTGGTGCAGGCACTGGCGCGGCTGGCC 
GGCGGCGAAACGGTCACCGCCATCGCCCTGGACTGCGGCTACCAGAGCCCGGCAGCCTTCTCGACCATGTTC 
CGCCGGGTCCTCGGCCAGCCGCCCAGCGCCTTCCAGGCGGGCGCGCTCAGATCGCCAGGAGGTCCATGA