ViewGene
Locus Name:
GeneID:
Location:

GeneID:2982
TrivialName: PA14_54030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54030
PAO1 Ortholog Locus:PA0790
Sequence Length:816
Protein Length:271
Start: 4790936
Stop: 4791751
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04179.1|AE004514_2 (AE004514) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
ATGTTCTATCTCCTGCTCTTTCTCTGCGGCTGCCTCACCGGGGTCAGCGCCGTGTTGTTCGGCTTTGGCGGC
GGCTTCGTGGTGGTGCCGCTGCTCTATCACCTGCTGCAACTCGGTCGCGCCGCCGACGACCCGCTGGCCCAG
GCGGCCATGCAGGTCGCGGTGGCCACCTCGACCTGCGTGATGATCGTCAACGCCGCCCTCGCCACCTATCGC
CACCGGCGCGCCGGCAGCCTGCTGCGCGCCTATGTCTGGCCGCTGGGCGCGTACATCGGTGTCGGCGCGGTG
CTCGGCGCGGCGCTGGTCGGCCTGGCCAGCGGCGACTTCATCCGCCTGGCCTTCGTCGCCTACCTCGCCATC
ACCATCCTCGACTGCCTGTTGCGCCGCGGCTTCCTCAGCCGCGCCGAGGAGCGCCAGGCGCGGCCGCTGGGT
GTCGGCGAGACGCGCCTGGGCGGAACGCTGATCGGTGCGATCGCCACCTTCCTCGGCGTCGGAGGCAGCGTG
ATGACCGTACCGCTGCTGCGCCGCTGCGGGCTGAGCATGACCCAGGCGACCTCCATGGCCAACCCGCTGAGC
CTGCCGGTGGCTCTTGGCGGCACCCTTACCTATCTGGTCCTGGCCGGCTACCAGGAGCAAGGCCTGGGCCGA
GGCTTCGTCGGCTACATCGACCTGCTGGCCTTCGCCACTCTGGCCGGCGGCGGCTGGCTCGGCATCCGCCTG
GCGACCCCGCTGATCGGGCGGATTCCCGATGCGCTGCATGCGCGGGTGTACGTCGGCCTGCTGGCGGCGGTG
ATGCTGAGCATGCTGGCGGGCTGA
Translation:
MFYLLLFLCGCLTGVSAVLFGFGGGFVVVPLLYHLLQLGRAADDPLAQAAMQVAVATSTCVMIVNAALATYR
HRRAGSLLRAYVWPLGAYIGVGAVLGAALVGLASGDFIRLAFVAYLAITILDCLLRRGFLSRAEERQARPLG
VGETRLGGTLIGAIATFLGVGGSVMTVPLLRRCGLSMTQATSMANPLSLPVALGGTLTYLVLAGYQEQGLGR
GFVGYIDLLAFATLAGGGWLGIRLATPLIGRIPDALHARVYVGLLAAVMLSMLAG*
AnnotationID:2990GeneID:2982
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 15:03:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0790
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG0730, Predicted permeases [General function prediction only]
      CD-Length = 258 residues,  95.7% aligned
      Score = 55.8 bits (134), Expect = 1e-08







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5967




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23109




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2982
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4828
                           PA0790_tr
                           translation of PA0790
                           271
                           99.99
                           99.99
                           0
                           1358.0
     

     
     
137845
                           gb|AAG04179.1|AE004514_2
                           (AE004514) hypothetical protein PA0790 [Pseudomonas aeruginosa PAO1]
                           271
                           99.99
                           99.99
                           0
                           1358.0
     

     
     
137846
                           emb|CAC44674.1|
                           (AL939131) putative integral membrane protein [Streptomyces coelicolor A3(2)]
                           306
                           41.17
                           50.65
                           58
                           439.0
     

     






      

          
GC ORFID: 45984How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0790Glimmer Score: 

          
Start: 162971Stop: 162156

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0790 translation of PA0790Homolog Bit Score 527.0

          
Other Homologs:  t_PA0790 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCTATCTCCTGCTCTTTCTCTGCGGCTGCCTCACCGGGGTCAGCGCCGTGTTGTTCGGCTTTGGCGGC 
GGCTTCGTGGTGGTGCCGCTGCTCTATCACCTGCTGCAACTCGGTCGCGCCGCCGACGACCCGCTGGCCCAG 
GCGGCCATGCAGGTCGCGGTGGCCACCTCGACCTGCGTGATGATCGTCAACGCCGCCCTCGCCACCTATCGC 
CACCGGCGCGCCGGCAGCCTGCTGCGCGCCTATGTCTGGCCGCTGGGCGCGTACATCGGTGTCGGCGCGGTG 
CTCGGCGCGGCGCTGGTCGGCCTGGCCAGCGGCGACTTCATCCGCCTGGCCTTCGTCGCCTACCTCGCCATC 
ACCATCCTCGACTGCCTGTTGCGCCGCGGCTTCCTCAGCCGCGCCGAGGAGCGCCAGGCGCGGCCGCTGGGT 
GTCGGCGAGACGCGCCTGGGCGGAACGCTGATCGGTGCGATCGCCACCTTCCTCGGCGTCGGAGGCAGCGTG 
ATGACCGTACCGCTGCTGCGCCGCTGCGGGCTGAGCATGACCCAGGCGACCTCCATGGCCAACCCGCTGAGC 
CTGCCGGTGGCTCTTGGCGGCACCCTTACCTATCTGGTCCTGGCCGGCTACCAGGAGCAAGGCCTGGGCCGA 
GGCTTCGTCGGCTACATCGACCTGCTGGCCTTCGCCACTCTGGCCGGCGGCGGCTGGCTCGGCATCCGCCTG 
GCGACCCCGCTGATCGGGCGGATTCCCGATGCGCTGCATGCGCGGGTGTACGTCGGCCTGCTGGCGGCGGTG 
ATGCTGAGCATGCTGGCGGGCTGA