ViewGene

Locus Name:
GeneID:
Location:

GeneID:2981
TrivialName: PA14_08360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08360
PAO1 Ortholog Locus:PA0651
Sequence Length:837
Protein Length:278
Start: 716114
Stop: 716950
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04040.1|AE004500_6 (AE004500) indole-3-glycerol-phosphate synthase [Pseudomonas aeruginosa PAO1]
Identities = 276/278 (99%), Positives = 277/278 (99%)
Sequence:
GTGAGTGTGCCGACGGTTCTGCAGAAGATCCTCGCCCGCAAGGCCGAGGAGGTCGCCGAGCGCCGAGCGCGC
GTCAACCTGGCCGAGGTCGAGCGGCTGGCGCGTAGCGCCGATGCGCCGCGCGGCTTCGCCAATGCCCTGCTG
GAGCGGGCCAAGCGCAAGGAGCCGGCAGTGATCGCCGAGATCAAGAAGGCATCGCCGAGCAAGGGCGTGCTG
CGCGAACACTTCGTCCCGGCGGAGATCGCCCGCAGCTACGAGGCGGGTGGCGCGGCGTGCCTGTCGGTGCTC
ACCGACGTGGACTTCTTCCAGGGCGCCGATGCCTATCTGAAGGAAGCGCGGGCCGCCTGTGCGCTGCCGGTG
GTCCGCAAGGACTTCATGATCGATCCGTACCAGATCGTCGAGGCGCGGGCGATCGGTGCCGACTGCATCCTG
CTGATCGTCTCGGCGCTGGACGACGTGCTGATGGCCGAACTGGCGGCGACTGCCAAGTCGGTCGGTCTCGAC
GTACTGGTCGAAGTGCATGACGGCACCGAGCTGGAACGTGCACTGAAGACCCTGGACACGCCGTTGGTGGGC
ATCAACAACCGCAACCTGCACACCTTCGAGGTGAGCCTGGAAACCACCCTCGACCTGTTGCCGGAAATTCCC
CGCGACCGCCTGGTGGTCACCGAGAGCGGTATTCTCAACCGGGCCGACGTGGAGCTGATGGAAGTCAGCGAG
GTCTACGCCTTCCTGGTTGGCGAGGCGTTCATGCGGGCCGACGATCCTGGCCTCGAGCTGAAGCGCCTGTTC
TTCCAGGAGCGTGGCGGTGTGGTGCTGGGCGCCGATCCTGACTGA
Translation:
MSVPTVLQKILARKAEEVAERRARVNLAEVERLARSADAPRGFANALLERAKRKEPAVIAEIKKASPSKGVL
REHFVPAEIARSYEAGGAACLSVLTDVDFFQGADAYLKEARAACALPVVRKDFMIDPYQIVEARAIGADCIL
LIVSALDDVLMAELAATAKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLPEIP
RDRLVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLFFQERGGVVLGADPD*
AnnotationID:2989GeneID:2981
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 14:02:30
Gene Name:trpC
Confidence Code:1
GeneProduct:indole-3-glycerol-phosphate synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00218,COG0134
Secondary Functional Category(ies):
EC Number:4.1.1.48
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66052.1|AE016234_5 (AE016775) indole-3-glycerol phosphate synthase [Pseudomonas putida
           KT2440]
          Length = 277

 Score =  443 bits (1140), Expect = e-124
 Identities = 223/268 (83%), Positives = 251/268 (93%)

>gb|AAO54136.1| (AE016858) indole-3-glycerol phosphate synthase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 278

 Score =  434 bits (1117), Expect = e-121
 Identities = 219/268 (81%), Positives = 246/268 (91%)

>gb|AAM35372.1| (AE011675) indole-3-glycerol phosphate synthase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 265

 Score =  323 bits (828), Expect = 7e-88
 Identities = 171/262 (65%), Positives = 209/262 (79%), Gaps = 5/262 (1%)

Structural Features:
pfam00218, IGPS, Indole-3-glycerol phosphate synthase.
CD-Length = 255 residues, 100.0% aligned
Score =  320 bits (821), Expect = 1e-88
Identities = 143/258 (55%), Positives = 180/258 (69%), Gaps = 3/258 (1%)

COG0134, TrpC, Indole-3-glycerol phosphate synthase 
[Amino acid transport and metabolism]
CD-Length = 254 residues, 100.0% aligned
Score =  301 bits (773), Expect = 5e-83
Identities = 146/259 (56%), Positives = 182/259 (70%), Gaps = 5/259 (1%)
Genomic Context:
Comment:
ReferenceID:14713
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23107
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34607
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2981_cdd.html
URL:
ReferenceID:35251
Author/Investigator(s): Essar DW, Eberly L, Han CY, Crawford IP.
Title: DNA sequences and characterization of four early genes of the tryptophan pathway in Pseudomonas aeruginosa.
PubMed: 2105306
MedLine:
Source:
J Bacteriol. 1990 Feb;172(2):853-66.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2105306
Homologs By Global Alignment
Gene ID:2981

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4827 PA0651_tr translation of PA0651 278 99.28 99.64 0 1359.0
137685 gb|AAG04040.1|AE004500_6 (AE004500) indole-3-glycerol-phosphate synthase [Pseudomonas aeruginosa PAO1] 278 98.92 99.64 0 1356.0
137686 gb|AAA25825.1| (M33814) trpC protein (gtg start codon) [Pseudomonas aeruginosa] 278 98.92 99.64 0 1356.0
137687 gb|AAA80555.1| (M33799) indoleglycerol phosphate synthetase [Pseudomonas putida] 279 81.00 91.39 3 1139.0
137688 gb|AAN66052.1|AE016234_5 (AE016775) indole-3-glycerol phosphate synthase [Pseudomonas putida KT2440] 279 80.28 90.68 3 1127.0
GC ORFID: 45983How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0651Glimmer Score:
Start: 6517457Stop: 6518293
Length: 837
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0651 translation of PA0651Homolog Bit Score 528.0
Other Homologs: psyr_15may02_Scaffold14_revised_gene2359 (ORF: BLASTX 441.0), psyr_15may02_Scaffold3_revised_gene4716 (ORF: BLASTX 249.0), t_PA0651 (ORF: GLIMMER)
GC ORF Sequence
GTGAGTGTGCCGACGGTTCTGCAGAAGATCCTCGCCCGCAAGGCCGAGGAGGTCGCCGAGCGCCGAGCGCGC
GTCAACCTGGCCGAGGTCGAGCGGCTGGCGCGTAGCGCCGATGCGCCGCGCGGCTTCGCCAATGCCCTGCTG
GAGCGGGCCAAGCGCAAGGAGCCGGCAGTGATCGCCGAGATCAAGAAGGCATCGCCGAGCAAGGGCGTGCTG
CGCGAACACTTCGTCCCGGCGGAGATCGCCCGCAGCTACGAGGCGGGTGGCGCGGCGTGCCTGTCGGTGCTC
ACCGACGTGGACTTCTTCCAGGGCGCCGATGCCTATCTGAAGGAAGCGCGGGCCGCCTGTGCGCTGCCGGTG
GTCCGCAAGGACTTCATGATCGATCCGTACCAGATCGTCGAGGCGCGGGCGATCGGTGCCGACTGCATCCTG
CTGATCGTCTCGGCGCTGGACGACGTGCTGATGGCCGAACTGGCGGCGACTGCCAAGTCGGTCGGTCTCGAC
GTACTGGTCGAAGTGCATGACGGCACCGAGCTGGAACGTGCACTGAAGACCCTGGACACGCCGTTGGTGGGC
ATCAACAACCGCAACCTGCACACCTTCGAGGTGAGCCTGGAAACCACCCTCGACCTGTTGCCGGAAATTCCC
CGCGACCGCCTGGTGGTCACCGAGAGCGGTATTCTCAACCGGGCCGACGTGGAGCTGATGGAAGTCAGCGAG
GTCTACGCCTTCCTGGTTGGCGAGGCGTTCATGCGGGCCGACGATCCTGGCCTCGAGCTGAAGCGCCTGTTC
TTCCAGGAGCGTGGCGGTGTGGTGCTGGGCGCCGATCCTGACTGA