ViewGene
Locus Name:
GeneID:
Location:

GeneID:298
TrivialName: PA14_34990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34990
PAO1 Ortholog Locus:PA2289
Sequence Length:2121
Protein Length:706
Start: 3114399
Stop: 3116519
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05677.1|AE004654_8 (AE004654) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 687/710 (96%), Positives = 694/710 (97%), Gaps = 4/710 (0%)
Sequence:
ATGCCGTCCCGACCCCGTCCCAGCTTCGTCTCCCACCTGTTGCCCGGCTCCCTCGCGCTCTGCGGCCTGGCC
ATCGCCTGCGCCGTCCAGGGCGAGGAGCGACGCAGCCTCGAACCCATGGTGGTGACCGGCAGCTACAACCCC
AGCGACACCTTCGACCTGCCGTTCTCGGTGGATAGCATCGAGCGCCGGCAGATCGCCGACGGCCAGCTCGGC
ATCAACCTCTCCGAAGTCCTGCCGCGGGTACCCGGCCTGGTGGTGCAGAACCGCCAGAACTACGCCCAGGAC
CTGCAAATCTCCTCGCGCGGCTACGGCGCCCGCTCGGCCTTCGGTATCCGCGGGCTGAAGCTGCTCGCCGAC
GGCATCCCGGCCAGCACGCCGGATGGCCAGGGCCAGGCCGCGACCCTCAACCTCGACGTCGCCGAGCGCATC
GAGGTACTGCGCGGGCCGGCCTCGACGATCTACGGCAGCAACGCCGGCGGGGTGATCCAGATGTTCTCCCGC
GACGGCCAGGGCGCCCCGCGGGTCGGCGCGGAAACCACCGTCGGCAGCGATGGCCTGAGCCGCAACCACCTG
TACACGGAAGGCGAGGGCGACGGGGTCGGTTTCCTGGTGGATGCTTCGCGGATGGACACCGACGGCTACCGC
GACCACAGCGCCGCGCGCCGCGACCAGACCTTCGCCAAGCTCAACTTCAGGCCCGACGCCGACAGCCGCCTG
GCGCTGATCTACAGCAGCCTGGAACAGAACGACACTGAAGATCCGCTGGGGCAGACCTGGGACGCCTACAAG
CACGACCCGCGCTCCGTCACCGCCAACGCCGAGCTGTACGACACGCGCAAGAGCATCGACCACCAGCAGGCC
GGGATGAACTACGAGCGCTACTTCGGCGAGGCGACCTTGCAGGTCAACGCCTACGTGGGCAAGCGCAGTGTC
GTGCAGTACCTGTCGATCCCCAAGGGGGTGGTCTCCAACAGTCAGCGTGGCGGCGGCGTGGTGGACTTCGAC
CGCGACTTCCACGGCGGCACCGTGCGCTGGCTGCAACCGGTACGCCAGGCGCCGGGCGAGCTGAACCTGACC
GTCGGCCTCGACTACGACCAGAGCCGCGACGACCGTCGCGGCTACCAGAACTTCAACGGCGACCAGCTCGGC
GTGAAGGGCGAGTTGCGCCGCGACGAGGTGGACACCGCCACCAGCCTCGATCCCTACCTGCAGGCGAGCTGG
GCCATCGACGCCTGGACCCTGCAGGCCGGGGTGCGCCACAGCACCATGAAGATGGAGGTCGACGACCGCTAC
TTGAGCAACGGCGATGCCAGCGGCTCGCGGCGCTACCGGAAGAACACCCCGTCGTTCTCGGTGATGTACGCC
TTCACCCCCGACCTGCACGGCTACCTCAGCGCCGGCAAGGGCTTCGAGACCCCGACCCAGGCGGAGATGGCC
TATGCGCCGGTGGCGGCGAACGCGCCGGACGTCTTCAACTTCGGCCTCAAGCCGGCCACCAGCAGCCAGTAC
GAAGCCGGTCTGAAGGCGCGCCTGTGGGGCAATACGCGGGTCAACGCGGCGATCTTCCAGATCCGCACCGAG
GACGAGATCGTCGTCGCCAGCTCCCTCGGCGGTCGCACCAGCTACCAGAACGCCGGCAAGACCCTGCGCCGC
GGCTTCGAACTGGGCGTGGAGAGCGAACTGAGCGAGCACTGGAACGCCAACCTGGCCTATACCCGGCTATCC
GCCACCTACGATTCGGATTTCGAGGCCGGCGGCAAGACCATCGGCAAGGGCAAGCACCTGCCGGGCGTGCCG
GCAAGCAGCCTGTTCGGCGAACTGGTATGGAAGCCCGTGGAGGGCATCAGCATGGGCTGGGAAGGCATGTAC
CGCAGCCAGGTCTACGTCGAGGACAGCAACAGCGAAAAGGCCGCGCCGAGCTATGCGGTATTCAACTGGCGC
ACCCGCTTCGAACAGCGCCTGGGGGCCTGGACCTTCCACCAGCTGGTGCGCCTGGACAACCTGTTCGACCGC
CAGTACGTCGGCTCGGTCATCGTCGGCGACGGCAACCGGCGTTACTACGAAGCGGCCCCCGGGCTGTCCTGG
TACGCGGGAGCCGGGGTCGAATACCAGTTCTGA
Translation:
MPSRPRPSFVSHLLPGSLALCGLAIACAVQGEERRSLEPMVVTGSYNPSDTFDLPFSVDSIERRQIADGQLG
INLSEVLPRVPGLVVQNRQNYAQDLQISSRGYGARSAFGIRGLKLLADGIPASTPDGQGQAATLNLDVAERI
EVLRGPASTIYGSNAGGVIQMFSRDGQGAPRVGAETTVGSDGLSRNHLYTEGEGDGVGFLVDASRMDTDGYR
DHSAARRDQTFAKLNFRPDADSRLALIYSSLEQNDTEDPLGQTWDAYKHDPRSVTANAELYDTRKSIDHQQA
GMNYERYFGEATLQVNAYVGKRSVVQYLSIPKGVVSNSQRGGGVVDFDRDFHGGTVRWLQPVRQAPGELNLT
VGLDYDQSRDDRRGYQNFNGDQLGVKGELRRDEVDTATSLDPYLQASWAIDAWTLQAGVRHSTMKMEVDDRY
LSNGDASGSRRYRKNTPSFSVMYAFTPDLHGYLSAGKGFETPTQAEMAYAPVAANAPDVFNFGLKPATSSQY
EAGLKARLWGNTRVNAAIFQIRTEDEIVVASSLGGRTSYQNAGKTLRRGFELGVESELSEHWNANLAYTRLS
ATYDSDFEAGGKTIGKGKHLPGVPASSLFGELVWKPVEGISMGWEGMYRSQVYVEDSNSEKAAPSYAVFNWR
TRFEQRLGAWTFHQLVRLDNLFDRQYVGSVIVGDGNRRYYEAAPGLSWYAGAGVEYQF*
AnnotationID:308GeneID:298
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:14
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:()
Synonyms:PA2289
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1629,pfam00593
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31331.1| (BX640439) probable TonB-dependent receptor [Bordetella
           bronchiseptica]
          Length = 699

 Score =  545 bits (1405), Expect = e-154
 Identities = 310/690 (44%), Positives = 412/690 (59%), Gaps = 21/690 (3%)

>gb|AAO69132.1| (AE016839) probable TonB-dependent receptor [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
          Length = 706

 Score =  478 bits (1230), Expect = e-134
 Identities = 291/705 (41%), Positives = 404/705 (57%), Gaps = 32/705 (4%)








 
Structural Features:
COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  97.9% aligned
Score =  170 bits (431), Expect = 4e-43
Identities = 175/766 (22%), Positives = 278/766 (36%), Gaps = 74/766 (9%)

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues,  99.9% aligned
Score =  157 bits (397), Expect = 4e-39
Identities = 151/735 (20%), Positives = 244/735 (33%), Gaps = 105/735 (14%)









   
Genomic Context:






   
Comment:


















    ReferenceID:599




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17741




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32498




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:298_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:298
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
488
                           PA2289_tr
                           translation of PA2289
                           710
                           97.04
                           97.88
                           4
                           3593.0
     

     
     
24867
                           gb|AAG05677.1|AE004654_8
                           (AE004654) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           710
                           97.04
                           97.88
                           4
                           3593.0
     

     
     
24868
                           emb|CAE31331.1|
                           (BX640439) probable TonB-dependent receptor [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           723
                           43.43
                           57.95
                           41
                           1426.0
     

     
     
24869
                           gb|AAL50647.1|AF441442_3
                           (AF441442) unknown [Serratia marcescens]
                           724
                           41.71
                           57.59
                           33
                           1311.0
     

     
     
24870
                           gb|AAO69132.1|
                           (AE016839) probable TonB-dependent receptor [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           730
                           40.41
                           56.16
                           48
                           1265.0
     

     






      

          
GC ORFID: 43300How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2289Glimmer Score: 

          
Start: 1839517Stop: 1837397

          
Length: 2121


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2289 translation of PA2289Homolog Bit Score 1386.0

          
Other Homologs:  t_PA2289 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGTCCCGACCCCGTCCCAGCTTCGTCTCCCACCTGTTGCCCGGCTCCCTCGCGCTCTGCGGCCTGGCC 
ATCGCCTGCGCCGTCCAGGGCGAGGAGCGACGCAGCCTCGAACCCATGGTGGTGACCGGCAGCTACAACCCC 
AGCGACACCTTCGACCTGCCGTTCTCGGTGGATAGCATCGAGCGCCGGCAGATCGCCGACGGCCAGCTCGGC 
ATCAACCTCTCCGAAGTCCTGCCGCGGGTACCCGGCCTGGTGGTGCAGAACCGCCAGAACTACGCCCAGGAC 
CTGCAAATCTCCTCGCGCGGCTACGGCGCCCGCTCGGCCTTCGGTATCCGCGGGCTGAAGCTGCTCGCCGAC 
GGCATCCCGGCCAGCACGCCGGATGGCCAGGGCCAGGCCGCGACCCTCAACCTCGACGTCGCCGAGCGCATC 
GAGGTACTGCGCGGGCCGGCCTCGACGATCTACGGCAGCAACGCCGGCGGGGTGATCCAGATGTTCTCCCGC 
GACGGCCAGGGCGCCCCGCGGGTCGGCGCGGAAACCACCGTCGGCAGCGATGGCCTGAGCCGCAACCACCTG 
TACACGGAAGGCGAGGGCGACGGGGTCGGTTTCCTGGTGGATGCTTCGCGGATGGACACCGACGGCTACCGC 
GACCACAGCGCCGCGCGCCGCGACCAGACCTTCGCCAAGCTCAACTTCAGGCCCGACGCCGACAGCCGCCTG 
GCGCTGATCTACAGCAGCCTGGAACAGAACGACACTGAAGATCCGCTGGGGCAGACCTGGGACGCCTACAAG 
CACGACCCGCGCTCCGTCACCGCCAACGCCGAGCTGTACGACACGCGCAAGAGCATCGACCACCAGCAGGCC 
GGGATGAACTACGAGCGCTACTTCGGCGAGGCGACCTTGCAGGTCAACGCCTACGTGGGCAAGCGCAGTGTC 
GTGCAGTACCTGTCGATCCCCAAGGGGGTGGTCTCCAACAGTCAGCGTGGCGGCGGCGTGGTGGACTTCGAC 
CGCGACTTCCACGGCGGCACCGTGCGCTGGCTGCAACCGGTACGCCAGGCGCCGGGCGAGCTGAACCTGACC 
GTCGGCCTCGACTACGACCAGAGCCGCGACGACCGTCGCGGCTACCAGAACTTCAACGGCGACCAGCTCGGC 
GTGAAGGGCGAGTTGCGCCGCGACGAGGTGGACACCGCCACCAGCCTCGATCCCTACCTGCAGGCGAGCTGG 
GCCATCGACGCCTGGACCCTGCAGGCCGGGGTGCGCCACAGCACCATGAAGATGGAGGTCGACGACCGCTAC 
TTGAGCAACGGCGATGCCAGCGGCTCGCGGCGCTACCGGAAGAACACCCCGTCGTTCTCGGTGATGTACGCC 
TTCACCCCCGACCTGCACGGCTACCTCAGCGCCGGCAAGGGCTTCGAGACCCCGACCCAGGCGGAGATGGCC 
TATGCGCCGGTGGCGGCGAACGCGCCGGACGTCTTCAACTTCGGCCTCAAGCCGGCCACCAGCAGCCAGTAC 
GAAGCCGGTCTGAAGGCGCGCCTGTGGGGCAATACGCGGGTCAACGCGGCGATCTTCCAGATCCGCACCGAG 
GACGAGATCGTCGTCGCCAGCTCCCTCGGCGGTCGCACCAGCTACCAGAACGCCGGCAAGACCCTGCGCCGC 
GGCTTCGAACTGGGCGTGGAGAGCGAACTGAGCGAGCACTGGAACGCCAACCTGGCCTATACCCGGCTATCC 
GCCACCTACGATTCGGATTTCGAGGCCGGCGGCAAGACCATCGGCAAGGGCAAGCACCTGCCGGGCGTGCCG 
GCAAGCAGCCTGTTCGGCGAACTGGTATGGAAGCCCGTGGAGGGCATCAGCATGGGCTGGGAAGGCATGTAC 
CGCAGCCAGGTCTACGTCGAGGACAGCAACAGCGAAAAGGCCGCGCCGAGCTATGCGGTATTCAACTGGCGC 
ACCCGCTTCGAACAGCGCCTGGGGGCCTGGACCTTCCACCAGCTGGTGCGCCTGGACAACCTGTTCGACCGC 
CAGTACGTCGGCTCGGTCATCGTCGGCGACGGCAACCGGCGTTACTACGAAGCGGCCCCCGGGCTGTCCTGG 
TACGCGGGAGCCGGGGTCGAATACCAGTTCTGA