ViewGene
Locus Name:
GeneID:
Location:

GeneID:2979
TrivialName: PA14_15940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15940
PAO1 Ortholog Locus:PA3747
Sequence Length:801
Protein Length:266
Start: 1359161
Stop: 1358361
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07134.1|AE004793_11 (AE004793) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 266/266 (100%), Positives = 266/266 (100%)
Sequence:
ATGCATCCCCTGCTGCCCAGCCTCATCGCTGCTGTTCTCTATCTCGGCACCGCCGCCTACCAGGGTGCCTGT
GTGTCCAAGCGCACCGCGCCGGGCAAACCCCTGCTGCTCCTGTTCGGACTCCTGGCACTGGTCGCCCACGCC
TTCAGCCTCTACCAGCAATTGCTGACCCCGGCCGGCCTGGTGCTGGACTTCTTCAACGCCGCCAGCCTGATC
GCCGCCGCGGTAATCCTCCTGACCCTGCTGGCGACCTTGCGGATACCGGTGGAGAACCTGCTCCTCCTTCTA
TTCCCGCTGGGCGCCCTCACCACCCTGCTGGCGGTACTCATCCCCCACGGCACCGTCGAGCCGATCAACGAA
CAACCAGGCATCCTGGCCCACATCCTGCTCTCGATCCTGGCCTACGGCCTGCTCACCATCGCGGTGTTCCAG
GCGCTCTTGCTGCTGCTCCAGGATTACCGCCTCAAGCACAAGCATCCGTCCGGGCTGATCCGCAACTTCCCG
CCCCTGCAAACCATGGAAAGCCTGCTGTTCGGCTTCCTCTGGGGTGGCTGGTCGCTGCTTTCGCTGTCGCTG
CTGTCCGGATGGCTGTTCGTCGACAACCTGTTCGCCCAGCACCTGGCGCACAAGACCATCCTGTCCTGCTTC
GCCTGGGTGGTCTTCGCCGTGCTCCTCTGGGGTCGCCACCAGCTCGGCTGGCGGGGCCACAAGGCGATCCGC
TGGACCCTGGCCGGTTTCTGCCTGTTGATGTTGGCGTACTTCGGCAGCAAGCTGGTGCGGGAATTCATCCTG
CACATCTGA
Translation:
MHPLLPSLIAAVLYLGTAAYQGACVSKRTAPGKPLLLLFGLLALVAHAFSLYQQLLTPAGLVLDFFNAASLI
AAAVILLTLLATLRIPVENLLLLLFPLGALTTLLAVLIPHGTVEPINEQPGILAHILLSILAYGLLTIAVFQ
ALLLLLQDYRLKHKHPSGLIRNFPPLQTMESLLFGFLWGGWSLLSLSLLSGWLFVDNLFAQHLAHKTILSCF
AWVVFAVLLWGRHQLGWRGHKAIRWTLAGFCLLMLAYFGSKLVREFILHI*
AnnotationID:2987GeneID:2979
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 10:10:43
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type transport permease
Cell Localization:()
Synonyms:PA3747
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4137
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54992.1| (AE016861) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 270

 Score =  406 bits (1043), Expect = e-113
 Identities = 200/263 (76%), Positives = 225/263 (85%)

>gb|AAN67082.1|AE016337_5 (AE016779) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 283

 Score =  395 bits (1016), Expect = e-109
 Identities = 201/263 (76%), Positives = 227/263 (86%)






 
Structural Features:
COG4137, ABC-type uncharacterized transport system, permease component 
CD-Length = 265 residues, 100.0% aligned
Score =  254 bits (650), Expect = 2e-68
Identities = 119/265 (44%), Positives = 156/265 (58%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5961




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23103




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31811




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2979_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2979
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4824
                           PA3747_tr
                           translation of PA3747
                           266
                           99.99
                           99.99
                           0
                           1359.0
     

     
     
137648
                           gb|AAG07134.1|AE004793_11
                           (AE004793) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           266
                           99.99
                           99.99
                           0
                           1359.0
     

     
     
137649
                           gb|AAO54992.1|
                           (AE016861) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           270
                           74.81
                           84.07
                           4
                           1042.0
     

     
     
137650
                           gb|AAN67082.1|AE016337_5
                           (AE016779) membrane protein, putative [Pseudomonas putida KT2440]
                           283
                           71.02
                           80.21
                           17
                           1012.0
     

     
     
137651
                           gb|AAQ61494.1|
                           (AE016923) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           274
                           37.95
                           51.82
                           9
                           386.0
     

     






      

          
GC ORFID: 45981How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3747Glimmer Score: 

          
Start: 3594776Stop: 3595576

          
Length: 801


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3747 translation of PA3747Homolog Bit Score 528.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4835 (ORF: BLASTX 404.0), t_PA3747 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATCCCCTGCTGCCCAGCCTCATCGCTGCTGTTCTCTATCTCGGCACCGCCGCCTACCAGGGTGCCTGT 
GTGTCCAAGCGCACCGCGCCGGGCAAACCCCTGCTGCTCCTGTTCGGACTCCTGGCACTGGTCGCCCACGCC 
TTCAGCCTCTACCAGCAATTGCTGACCCCGGCCGGCCTGGTGCTGGACTTCTTCAACGCCGCCAGCCTGATC 
GCCGCCGCGGTAATCCTCCTGACCCTGCTGGCGACCTTGCGGATACCGGTGGAGAACCTGCTCCTCCTTCTA 
TTCCCGCTGGGCGCCCTCACCACCCTGCTGGCGGTACTCATCCCCCACGGCACCGTCGAGCCGATCAACGAA 
CAACCAGGCATCCTGGCCCACATCCTGCTCTCGATCCTGGCCTACGGCCTGCTCACCATCGCGGTGTTCCAG 
GCGCTCTTGCTGCTGCTCCAGGATTACCGCCTCAAGCACAAGCATCCGTCCGGGCTGATCCGCAACTTCCCG 
CCCCTGCAAACCATGGAAAGCCTGCTGTTCGGCTTCCTCTGGGGTGGCTGGTCGCTGCTTTCGCTGTCGCTG 
CTGTCCGGATGGCTGTTCGTCGACAACCTGTTCGCCCAGCACCTGGCGCACAAGACCATCCTGTCCTGCTTC 
GCCTGGGTGGTCTTCGCCGTGCTCCTCTGGGGTCGCCACCAGCTCGGCTGGCGGGGCCACAAGGCGATCCGC 
TGGACCCTGGCCGGTTTCTGCCTGTTGATGTTGGCGTACTTCGGCAGCAAGCTGGTGCGGGAATTCATCCTG 
CACATCTGA