ViewGene
Locus Name:
GeneID:
Location:

GeneID:2978
TrivialName: PA14_17720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17720
PAO1 Ortholog Locus:PA3599
Sequence Length:786
Protein Length:261
Start: 1523216
Stop: 1522431
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06987.1|AE004780_6 (AE004780) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 261/261 (100%), Positives = 261/261 (100%)
Sequence:
ATGAGTTTCACCTTGCAGGACATCGCCTGGCACCGCTCCGTCGGGCAACTGGTCGAGGCGCTGGATGCGCCG
GACTTCTGGATTCGCCTGGTACGCCTGCTCGAACAGTACGTTCCGTTCGACAGCTGGGTGGCCCTGCTGTTC
AGCCAGGGCCGGCCACAGGTGTTCGCCGAATGCCCGGGCGCCGACGGCGGGCCGGATCCGCTGTTCCAGGAC
TACCTGCGAGGCCTCTACCTGCTCGACCCGTTCTACATCGCCAGCCGCGAGAACCCGTGCAGCGGCCTGTTC
CGTCTGGCCGACGTGGCACCGGAATGCTTCGAGCAGACCGATTACTACCAGCGTTACTTCCGCCTCAACGTG
GTGGCCGATGAAATCCAGATCAACGTCCAGCTCTCCGGCGAACGCACCCTCTGCCTGTCGCTCGGCTCGCGG
CGCCGCTTCACCCCCGAGCAACTCGCCGTGCTCGGTCTGGTGCGGCCCTGGGTGGCCGGGCTGATGCGCCAG
CGCCTGGCCTTCGAGGACGAAGTGTTGAACAGCCCTGCGGCGCCGGAGCCGGGCTGGCAGGGTTCGCTGGAG
AAGGTCGCGGAGCAGATGGGCACGCCGCTGACGGCGCGCGAACTGGAGGTCGGCAGGCTGATGCTCAGCGGC
TGCTCGAGCAAGGAGATCGCCCGCAAGCTGGCGATCTCGGCGGAAACCGTGAAGGTCCACCGCAAGCACATG
TACGGCAAGCTCGGCATCAAGTCGCAGTCCGAGCTGTTCGGCCTGTTCCTCCAGGCCCAGGGCTGA
Translation:
MSFTLQDIAWHRSVGQLVEALDAPDFWIRLVRLLEQYVPFDSWVALLFSQGRPQVFAECPGADGGPDPLFQD
YLRGLYLLDPFYIASRENPCSGLFRLADVAPECFEQTDYYQRYFRLNVVADEIQINVQLSGERTLCLSLGSR
RRFTPEQLAVLGLVRPWVAGLMRQRLAFEDEVLNSPAAPEPGWQGSLEKVAEQMGTPLTARELEVGRLMLSG
CSSKEIARKLAISAETVKVHRKHMYGKLGIKSQSELFGLFLQAQG*
AnnotationID:2986GeneID:2978
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 12:12:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LuxR family
Cell Localization:()
Synonyms:PA3599
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00421
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69441.1|AE016579_12 (AE016788) transcriptional regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 265

 Score =  393 bits (1010), Expect = e-109
 Identities = 191/259 (73%), Positives = 216/259 (83%)

>gb|AAF93637.1| (AE004133) transcriptional regulator, LuxR family [Vibrio cholerae]
          Length = 267

 Score =  116 bits (291), Expect = 1e-25
 Identities = 87/260 (33%), Positives = 126/260 (48%), Gaps = 7/260 (2%)






 
Structural Features:
smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon
CD-Length = 58 residues,  89.7% aligned
Score = 68.2 bits (167), Expect = 2e-12
Identities = 25/52 (48%), Positives = 37/52 (71%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5959




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23101




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31942




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2978_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2978
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4821
                           PA3599_tr
                           translation of PA3599
                           261
                           99.99
                           99.99
                           0
                           1360.0
     

     
     
137644
                           gb|AAG06987.1|AE004780_6
                           (AE004780) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           261
                           99.99
                           99.99
                           0
                           1360.0
     

     
     
137645
                           gb|AAN69441.1|AE016579_12
                           (AE016788) transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
                           265
                           72.07
                           81.50
                           4
                           1007.0
     

     
     
137646
                           gb|AAG05979.1|AE004688_1
                           (AE004688) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           278
                           47.48
                           59.35
                           27
                           622.0
     

     
     
4822
                           PA2591_tr
                           translation of PA2591
                           278
                           47.12
                           59.35
                           27
                           618.0
     

     






      

          
GC ORFID: 45980How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3599Glimmer Score: 

          
Start: 3430720Stop: 3431505

          
Length: 786


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3599 translation of PA3599Homolog Bit Score 528.0

          
Other Homologs:  t_PA2591 (ORF: BLASTX 238.0), t_PA1484 (ORF: BLASTX 205.0), t_PA3599 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTTCACCTTGCAGGACATCGCCTGGCACCGCTCCGTCGGGCAACTGGTCGAGGCGCTGGATGCGCCG 
GACTTCTGGATTCGCCTGGTACGCCTGCTCGAACAGTACGTTCCGTTCGACAGCTGGGTGGCCCTGCTGTTC 
AGCCAGGGCCGGCCACAGGTGTTCGCCGAATGCCCGGGCGCCGACGGCGGGCCGGATCCGCTGTTCCAGGAC 
TACCTGCGAGGCCTCTACCTGCTCGACCCGTTCTACATCGCCAGCCGCGAGAACCCGTGCAGCGGCCTGTTC 
CGTCTGGCCGACGTGGCACCGGAATGCTTCGAGCAGACCGATTACTACCAGCGTTACTTCCGCCTCAACGTG 
GTGGCCGATGAAATCCAGATCAACGTCCAGCTCTCCGGCGAACGCACCCTCTGCCTGTCGCTCGGCTCGCGG 
CGCCGCTTCACCCCCGAGCAACTCGCCGTGCTCGGTCTGGTGCGGCCCTGGGTGGCCGGGCTGATGCGCCAG 
CGCCTGGCCTTCGAGGACGAAGTGTTGAACAGCCCTGCGGCGCCGGAGCCGGGCTGGCAGGGTTCGCTGGAG 
AAGGTCGCGGAGCAGATGGGCACGCCGCTGACGGCGCGCGAACTGGAGGTCGGCAGGCTGATGCTCAGCGGC 
TGCTCGAGCAAGGAGATCGCCCGCAAGCTGGCGATCTCGGCGGAAACCGTGAAGGTCCACCGCAAGCACATG 
TACGGCAAGCTCGGCATCAAGTCGCAGTCCGAGCTGTTCGGCCTGTTCCTCCAGGCCCAGGGCTGA