ViewGene
Locus Name:
GeneID:
Location:

GeneID:2977
TrivialName: PA14_01890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01890
PAO1 Ortholog Locus:PA0152
Sequence Length:828
Protein Length:275
Start: 172662
Stop: 173489
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03542.1|AE004453_5 (AE004453) transcriptional regulator PcaQ [Pseudomonas aeruginosa PAO1]
Identities = 273/275 (99%), Positives = 273/275 (99%)
Sequence:
GTGGCGGTGTCGCAGCCGGCGATCTCCAAGACCCTCAAGGAACTGGAGGAAATCCTCGGCGCGCGCCTGTTC
GAACGGAGCAAGGCCGGCGCCGAGCTGACCGAGGCGGGCGTGACCTTCCTGCGCTATGCCGGCCCCTGCGTG
CAGGCCCTGCGCGACGGAGTGAACACCCTGCGCGGTCACGAGGCGCAGGTCGAGACGGTGCGGGTCGGCGTG
CTGTCGACGGTGGAGAGCCTGGTGGTGCCCGAGGTGATCCGGCGCCTGCACCGGCGCCACGGTGCGCTGGTG
GTCAGCGTCGCCACCGGCCCCAGCGCCTACCTGCTGGCGCAACTGAAGGTCGGCGAGCTGGACCTGGTGGTC
GGGCGGATGACCGATAGCCCGGACATCCAGGGCCTGACCTTCGAGCACCTGTACAGCGAGTCGATGATGCTG
GTGGTGCGTCCCGGCCACCCCTTGCTCGCCGCGCCCCTCGGCGTCCTGCAGCGGCTGGCCGAATTCCCACTG
GTGCTGCCGCTGGCCGGCACCACCATCCGCCGCCACGCCGACAGCCTGTTCGTGCAATGGGGCATCCCGCTC
GCCGGACAGCGCCTGGAGACCCTCTCGCCGACCCTCAGCCGCAGCTATGTGTTGCGCAGCGAGGCGATCTGG
GTGGCGCCGCGCGACGCCGTGCGCCTGGACGTCGGCAACGGCGAGCTGGCCGAGCTGGACCTGGGTATCCGC
GAACCGGGCGGTTCGGTCGGGCTGTGCCACAACGCGGCCTTGCCGTTGCCGCTGGGGGCGCAATGGTTCAGC
GCGGTGTTGCGCGAGGTGGCCGCCGAGTTGCACTGA
Translation:
MAVSQPAISKTLKELEEILGARLFERSKAGAELTEAGVTFLRYAGPCVQALRDGVNTLRGHEAQVETVRVGV
LSTVESLVVPEVIRRLHRRHGALVVSVATGPSAYLLAQLKVGELDLVVGRMTDSPDIQGLTFEHLYSESMML
VVRPGHPLLAAPLGVLQRLAEFPLVLPLAGTTIRRHADSLFVQWGIPLAGQRLETLSPTLSRSYVLRSEAIW
VAPRDAVRLDVGNGELAELDLGIREPGGSVGLCHNAALPLPLGAQWFSAVLREVAAELH*
AnnotationID:2985GeneID:2977
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:42
Gene Name:pcaQ
Confidence Code:2
GeneProduct:transcriptional regulator PcaQ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:pca operon transcriptional activator PcaQ
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG17457.1|AF302797_3 (AF302797) PcaQ [Pseudomonas sp. IMT40] [Pseudomonas indica]
          Length = 310

 Score =  389 bits (998), Expect = e-107
 Identities = 200/271 (73%), Positives = 223/271 (82%)

>gb|AAN67334.1|AE016359_9 (AE016780) transcriptional regulator PcaQ [Pseudomonas putida
           KT2440]
          Length = 310

 Score =  366 bits (939), Expect = e-101
 Identities = 189/273 (69%), Positives = 219/273 (80%)

>emb|CAB43483.1| (Y18527) pcaQ regulator [Pseudomonas sp.]
          Length = 309

 Score =  353 bits (907), Expect = 5e-97
 Identities = 185/270 (68%), Positives = 215/270 (79%), Gaps = 1/270 (0%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  90.2% aligned
Score =  108 bits (271), Expect = 5e-25
Identities = 81/274 (29%), Positives = 111/274 (40%), Gaps = 8/274 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score =  102 bits (256), Expect = 4e-23







   
Genomic Context:






   
Comment:


















    ReferenceID:14711




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23099




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33495




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2977_cdd.html


    		




 
URL:

















    ReferenceID:35495




  
Author/Investigator(s):
        Parke D.





  
Title:
        Characterization of PcaQ, a LysR-type transcriptional activator required for catabolism of phenolic compounds, from Agrobacterium tumefaciens.




  
PubMed:
        8550427


MedLine:
        




    
Source:
J Bacteriol. 1996 Jan;178(1):266-72.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8550427









           
Homologs By Global Alignment 

           

       



     
Gene ID:2977
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4820
                           PA0152_tr
                           translation of PA0152
                           275
                           99.27
                           99.27
                           0
                           1362.0
     

     
     
137638
                           gb|AAG03542.1|AE004453_5
                           (AE004453) transcriptional regulator PcaQ [Pseudomonas aeruginosa PAO1]
                           275
                           98.90
                           99.27
                           0
                           1359.0
     

     
     
137639
                           gb|AAG17457.1|AF302797_3
                           (AF302797) PcaQ [Pseudomonas sp. IMT40] [Pseudomonas indica]
                           310
                           64.51
                           71.93
                           35
                           994.0
     

     
     
137641
                           gb|AAO55849.1|
                           (AE016864) pca operon transcriptional activator PcaQ [Pseudomonas syringae pv. tomato str. DC3000]
                           310
                           61.29
                           70.00
                           36
                           917.0
     

     
     
137640
                           gb|AAN67334.1|AE016359_9
                           (AE016780) transcriptional regulator PcaQ [Pseudomonas putida KT2440]
                           310
                           60.96
                           70.64
                           35
                           937.0
     

     






      

          
GC ORFID: 45979How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0152Glimmer Score: 

          
Start: 5974001Stop: 5974828

          
Length: 828


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0152 translation of PA0152Homolog Bit Score 529.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1093 (ORF: BLASTX 399.0), t_PA0152 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCGGTGTCGCAGCCGGCGATCTCCAAGACCCTCAAGGAACTGGAGGAAATCCTCGGCGCGCGCCTGTTC 
GAACGGAGCAAGGCCGGCGCCGAGCTGACCGAGGCGGGCGTGACCTTCCTGCGCTATGCCGGCCCCTGCGTG 
CAGGCCCTGCGCGACGGAGTGAACACCCTGCGCGGTCACGAGGCGCAGGTCGAGACGGTGCGGGTCGGCGTG 
CTGTCGACGGTGGAGAGCCTGGTGGTGCCCGAGGTGATCCGGCGCCTGCACCGGCGCCACGGTGCGCTGGTG 
GTCAGCGTCGCCACCGGCCCCAGCGCCTACCTGCTGGCGCAACTGAAGGTCGGCGAGCTGGACCTGGTGGTC 
GGGCGGATGACCGATAGCCCGGACATCCAGGGCCTGACCTTCGAGCACCTGTACAGCGAGTCGATGATGCTG 
GTGGTGCGTCCCGGCCACCCCTTGCTCGCCGCGCCCCTCGGCGTCCTGCAGCGGCTGGCCGAATTCCCACTG 
GTGCTGCCGCTGGCCGGCACCACCATCCGCCGCCACGCCGACAGCCTGTTCGTGCAATGGGGCATCCCGCTC 
GCCGGACAGCGCCTGGAGACCCTCTCGCCGACCCTCAGCCGCAGCTATGTGTTGCGCAGCGAGGCGATCTGG 
GTGGCGCCGCGCGACGCCGTGCGCCTGGACGTCGGCAACGGCGAGCTGGCCGAGCTGGACCTGGGTATCCGC 
GAACCGGGCGGTTCGGTCGGGCTGTGCCACAACGCGGCCTTGCCGTTGCCGCTGGGGGCGCAATGGTTCAGC 
GCGGTGTTGCGCGAGGTGGCCGCCGAGTTGCACTGA