ViewGene
Locus Name:
GeneID:
Location:

GeneID:2976
TrivialName: PA14_66460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66460
PAO1 Ortholog Locus:PA5027
Sequence Length:816
Protein Length:271
Start: 5928981
Stop: 5929796
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08412.1|AE004916_1 (AE004916) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
ATGATCCGCCACCTCCTGGTCGCCCACGACCTCACCCCGGAAGCCGACGTCGCCCTCGCCCGCGCCGCCCAG
TTGGCCCGCCAGCACGATGCGCGGGTCAGTCTGCTGCACGTGTACGACCCGGGGCTATCGGCGTCGGCGGTG
AAGACCGTCAGCGCCATGCTGCAACTCAAGCGCAAGGAGGCCGGCCTCGACGAGGACAGCGCCATCCACCTG
TTCAGGGGCCAGCCGATCGACGGCATCCTGCAGCAGACCCGGGCGCTCGAACCGGACCTACTGCTGATGGGC
GCACACCACCAGAAGACCTTCGAACGCTTCGGCAACACCACCCTCGACCAAGTGGTGCGGCGCAGCCGGGTG
CCGGTGCTGCTCGCCGTGCGCGAGGCGGACGAACCCTACCGCCAGGCGCTCAGCGCCCTGGACTTTTCCCAG
TGCGCCTGTACCGCGCTGCGCCAGGCCTACCGCCTGCTGCCGGTGGAAGCCGACCTGCACGCCCTGCACGTG
TTCGAGTCCCCCGACGACGGCGTGCTCGGCCTGCCCCGGCAGAATGCCGCGCACCTAGCCACCCAGGCCGGG
CTGATCGAACAATTGCTGAGCGACGAGCAGGAGCGCCTGCCGGGCGTCGGGCCGCAGCTGAGCCACGAAGTG
GTTCCCGGCGTGCTGCCGTACAGCCTGGACGCCGCGTTGAAGCAGCGCCAGCCGGAGCTGCTCGCCCTCGGC
CGGCACAGCCGCAACGCGCTGATGCAGGCGCTGCTCGGCAACCTGGCGCAACGTTACCTGCGCCAGCCGAGC
TGCGACGTCCTGGTTACCTCGTAG
Translation:
MIRHLLVAHDLTPEADVALARAAQLARQHDARVSLLHVYDPGLSASAVKTVSAMLQLKRKEAGLDEDSAIHL
FRGQPIDGILQQTRALEPDLLLMGAHHQKTFERFGNTTLDQVVRRSRVPVLLAVREADEPYRQALSALDFSQ
CACTALRQAYRLLPVEADLHALHVFESPDDGVLGLPRQNAAHLATQAGLIEQLLSDEQERLPGVGPQLSHEV
VPGVLPYSLDAALKQRQPELLALGRHSRNALMQALLGNLAQRYLRQPSCDVLVTS*
AnnotationID:2984GeneID:2976
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 14:02:03
Gene Name:
Confidence Code:3
GeneProduct:putative universal stress protein
Cell Localization:()
Synonyms:PA5027
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00582
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00582, Usp, Universal stress protein family.
CD-Length = 139 residues,  98.6% aligned
Score = 69.1 bits (168), Expect = 5e-13
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 13/137 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5955




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23097




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34986




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2976_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2976
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4819
                           PA5027_tr
                           translation of PA5027
                           271
                           99.99
                           99.99
                           0
                           1362.0
     

     
     
137637
                           gb|AAG08412.1|AE004916_1
                           (AE004916) hypothetical protein PA5027 [Pseudomonas aeruginosa PAO1]
                           271
                           99.99
                           99.99
                           0
                           1362.0
     

     






      

          
GC ORFID: 45978How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5027Glimmer Score: 

          
Start: 5192664Stop: 5193479

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5027 translation of PA5027Homolog Bit Score 529.0

          
Other Homologs:  t_PA5027 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCCACCTCCTGGTCGCCCACGACCTCACCCCGGAAGCCGACGTCGCCCTCGCCCGCGCCGCCCAG 
TTGGCCCGCCAGCACGATGCGCGGGTCAGTCTGCTGCACGTGTACGACCCGGGGCTATCGGCGTCGGCGGTG 
AAGACCGTCAGCGCCATGCTGCAACTCAAGCGCAAGGAGGCCGGCCTCGACGAGGACAGCGCCATCCACCTG 
TTCAGGGGCCAGCCGATCGACGGCATCCTGCAGCAGACCCGGGCGCTCGAACCGGACCTACTGCTGATGGGC 
GCACACCACCAGAAGACCTTCGAACGCTTCGGCAACACCACCCTCGACCAAGTGGTGCGGCGCAGCCGGGTG 
CCGGTGCTGCTCGCCGTGCGCGAGGCGGACGAACCCTACCGCCAGGCGCTCAGCGCCCTGGACTTTTCCCAG 
TGCGCCTGTACCGCGCTGCGCCAGGCCTACCGCCTGCTGCCGGTGGAAGCCGACCTGCACGCCCTGCACGTG 
TTCGAGTCCCCCGACGACGGCGTGCTCGGCCTGCCCCGGCAGAATGCCGCGCACCTAGCCACCCAGGCCGGG 
CTGATCGAACAATTGCTGAGCGACGAGCAGGAGCGCCTGCCGGGCGTCGGGCCGCAGCTGAGCCACGAAGTG 
GTTCCCGGCGTGCTGCCGTACAGCCTGGACGCCGCGTTGAAGCAGCGCCAGCCGGAGCTGCTCGCCCTCGGC 
CGGCACAGCCGCAACGCGCTGATGCAGGCGCTGCTCGGCAACCTGGCGCAACGTTACCTGCGCCAGCCGAGC 
TGCGACGTCCTGGTTACCTCGTAG