ViewGene
Locus Name:
GeneID:
Location:

GeneID:2975
TrivialName: PA14_66010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66010
PAO1 Ortholog Locus:PA4992
Sequence Length:813
Protein Length:270
Start: 5879065
Stop: 5879877
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08377.1|AE004912_3 (AE004912) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 268/270 (99%), Positives = 269/270 (99%)
Sequence:
ATGATCAGGGATACCCTCCACGACCTGCACCGCCCGCTGGGCGACACCGGCCTGGCCGTTTCGCCGCTGGGC
CTGGGCACCGTCAAGTTCGGCCGCGACCAGGGAGTGAAGTACCCTTCCGGCTTCACCATCCCCGACGACCGC
GAAGCCGCCGACCTGCTGGCCCTGGCCCGCGACCTCGGCATCAACCTGATCGACACCGCCCCGGCCTACGGC
CGCAGCGAGGAACGCCTCGGCCCGCTGCTGCGCGGCCAGCGCGAGCATTGGGTGATCGTCAGCAAGGTCGGC
GAAGAGTTCGTCGACGGCCAGTCAGTCTTCGACTTCTCCGCCACGCATACCCGGCGCTCCGTCGAACGCAGC
CTGAAGCGCCTGGAGACCGAGCGGATCGAGCTGGTGCTGGTGCATTCCGATGGCAACGACCTGGATATCCTC
GAGAACAGCGAGGTCTACCCGACTCTCGCCGCGCTCAAGCGCGAGGGCCTGATCGGCGCCTACGGACTCTCC
GGCAAGACCGTCGAAGGTGGCCTGCGCGCCCTGCGCGAGGGCGATTGCGCGATGGTCACCTACAACCTGAAC
GAGCGCGCCGAGCGCCCGGTCATCGAGTACGCCGCGGCCCATGCCAAGGGCATCCTGGTGAAGAAGGCGCTG
GCCAGCGGGCATGCCTGCCTGGGCGCCGGACAGGACCCGGTGCGCGCCAGCTTCGAACTGGTCTTCGACCAG
CCGGGCGTCGCCGCCGCCATCGTCGGCACCATCAATCCGCTGCACCTGGCCCATAATGTCGCGATGGCCGCG
CAAGCCCTGAAAAAGGCCTGA
Translation:
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRDQGVKYPSGFTIPDDREAADLLALARDLGINLIDTAPAYG
RSEERLGPLLRGQREHWVIVSKVGEEFVDGQSVFDFSATHTRRSVERSLKRLETERIELVLVHSDGNDLDIL
ENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKAL
ASGHACLGAGQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALKKA*
AnnotationID:2983GeneID:2975
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 08:08:25
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA4992
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0667
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58409.1| (AE016874) oxidoreductase, aldo/keto reductase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 271

 Score =  407 bits (1046), Expect = e-113
 Identities = 202/263 (76%), Positives = 229/263 (87%)








 
Structural Features:
COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 
[Energy production and conversion]
CD-Length = 316 residues,  93.0% aligned
Score =  156 bits (395), Expect = 3e-39
Identities = 102/305 (33%), Positives = 127/305 (41%), Gaps = 58/305 (19%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5953




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23095




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35063




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2975_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2975
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4818
                           PA4992_tr
                           translation of PA4992
                           270
                           99.25
                           99.62
                           0
                           1363.0
     

     
     
137634
                           gb|AAG08377.1|AE004912_3
                           (AE004912) hypothetical protein PA4992 [Pseudomonas aeruginosa PAO1]
                           270
                           99.25
                           99.62
                           0
                           1363.0
     

     
     
137636
                           gb|AAN70499.1|AE016691_7
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           270
                           76.66
                           84.07
                           0
                           1043.0
     

     
     
137635
                           gb|AAO58409.1|
                           (AE016874) oxidoreductase, aldo/keto reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           271
                           74.90
                           85.23
                           1
                           1044.0
     

     






      

          
GC ORFID: 45977How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4992Glimmer Score: 

          
Start: 5142748Stop: 5143560

          
Length: 813


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4992 translation of PA4992Homolog Bit Score 529.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3677 (ORF: BLASTX 409.0), t_PA4992 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAGGGATACCCTCCACGACCTGCACCGCCCGCTGGGCGACACCGGCCTGGCCGTTTCGCCGCTGGGC 
CTGGGCACCGTCAAGTTCGGCCGCGACCAGGGAGTGAAGTACCCTTCCGGCTTCACCATCCCCGACGACCGC 
GAAGCCGCCGACCTGCTGGCCCTGGCCCGCGACCTCGGCATCAACCTGATCGACACCGCCCCGGCCTACGGC 
CGCAGCGAGGAACGCCTCGGCCCGCTGCTGCGCGGCCAGCGCGAGCATTGGGTGATCGTCAGCAAGGTCGGC 
GAAGAGTTCGTCGACGGCCAGTCAGTCTTCGACTTCTCCGCCACGCATACCCGGCGCTCCGTCGAACGCAGC 
CTGAAGCGCCTGGAGACCGAGCGGATCGAGCTGGTGCTGGTGCATTCCGATGGCAACGACCTGGATATCCTC 
GAGAACAGCGAGGTCTACCCGACTCTCGCCGCGCTCAAGCGCGAGGGCCTGATCGGCGCCTACGGACTCTCC 
GGCAAGACCGTCGAAGGTGGCCTGCGCGCCCTGCGCGAGGGCGATTGCGCGATGGTCACCTACAACCTGAAC 
GAGCGCGCCGAGCGCCCGGTCATCGAGTACGCCGCGGCCCATGCCAAGGGCATCCTGGTGAAGAAGGCGCTG 
GCCAGCGGGCATGCCTGCCTGGGCGCCGGACAGGACCCGGTGCGCGCCAGCTTCGAACTGGTCTTCGACCAG 
CCGGGCGTCGCCGCCGCCATCGTCGGCACCATCAATCCGCTGCACCTGGCCCATAATGTCGCGATGGCCGCG 
CAAGCCCTGAAAAAGGCCTGA