ViewGene
Locus Name:
GeneID:
Location:

GeneID:2974
TrivialName: PA14_07900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07900
PAO1 Ortholog Locus:PA0606
Sequence Length:831
Protein Length:276
Start: 681283
Stop: 682113
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03995.1|AE004497_2 (AE004497) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 275/275 (100%), Positives = 275/275 (100%)
Sequence:
ATGCTGAGTCCCTACATGTCCCCGGTCGAGCGCCTGTGGTTCTACTCCCTGCGCATCCTCTGCGGCCTGGTA
CTGCTGTTCCTGGTACTGCCGGTGCTGGTCATCGTGCCGCTGTCGTTCAACTCCGGTACCTTCCTGGTCTAC
CCGCTGCAAGGGTTCTCCCTGCGCTGGTACGCCGACTTCTTCCAGTCCGCCGAGTGGATGCGCTCGTTGACC
AACAGCATGATCGTCGCTCCGGCGGCGACCCTGCTGGCGATGGTCTTCGGCACTCTGGCGGCGATCGGCCTG
ACCCGCGGCGAGTTCCGCGGCAAGGCACTGGTGATGAGCCTGATGATTTCGCCGATGGTGGTGCCGGTGGTG
ATCATCGGCGTGGCCAGCTACCTGTTCTTCGCTCCGCTCGGGCTCGGCAACAGCTACCTGTCGCTGATCGTG
GTGCATGCGGTGCTCGGCGTGCCGTTCGTGATCATCACCGTCTCCGCGACCCTGCAGGGGTTCAACTACAAC
CTGGTGCGCGCCGCCGCCAGCCTCGGCGCGCCGCCGCTGACCACCTTCTTCCGGGTGACCCTGCCGCTGATC
GCTCCCGGGGTGATCTCCGGCGCGCTGTTCGCCTTCGCCACCTCGTTCGACGAAGTGGTAGTGACCCTCTTC
CTCGCCGGCCCCGAGCAGGCCACCCTGCCGCGGCAGATGTTCAGCGGCATTCGCGAGAACCTGAGCCCCACC
ATTGCCGCCGCGGCGACCTTGCTGATCGGTTTCTCCGTACTGCTGTTGCTGACCCTGGAGTGGCTGCGCGGG
CGCAGCGAGAAGATGCGTACAGCACAACCCGGCGCCTGA
Translation:
MLSPYMSPVERLWFYSLRILCGLVLLFLVLPVLVIVPLSFNSGTFLVYPLQGFSLRWYADFFQSAEWMRSLT
NSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSLIV
VHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLF
LAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSVLLLLTLEWLRGRSEKMRTAQPGA*
AnnotationID:2982GeneID:2974
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:36
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA0606
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative polyamine ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:COG1177
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66044.1|AE016233_10 (AE016775) polyamine ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 275

 Score =  483 bits (1243), Expect = e-136
 Identities = 247/274 (90%), Positives = 263/274 (95%)

>gb|AAO54107.1| (AE016857) polyamine ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 273

 Score =  475 bits (1223), Expect = e-133
 Identities = 244/273 (89%), Positives = 259/273 (94%)

>gb|AAM84965.1|AE013742_7 (AE013742) putative permease of ABC transporter [Yersinia pestis
           KIM]
          Length = 287

 Score =  332 bits (852), Expect = 1e-90
 Identities = 170/260 (65%), Positives = 205/260 (78%)






 
Structural Features:
COG1177, PotC, ABC-type spermidine/putrescine transport system, 
permease component II 
[Amino acid transport and metabolism]
CD-Length = 267 residues,  99.6% aligned
Score =  221 bits (565), Expect = 6e-59
Identities = 122/266 (45%), Positives = 165/266 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5951




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23093




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33899




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2974_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2974
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4817
                           PA0606_tr
                           translation of PA0606
                           276
                           99.63
                           99.63
                           0
                           1366.0
     

     
     
137610
                           gb|AAG03995.1|AE004497_2
                           (AE004497) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           276
                           99.63
                           99.63
                           0
                           1366.0
     

     
     
137611
                           gb|AAN66044.1|AE016233_10
                           (AE016775) polyamine ABC transporter, permease protein [Pseudomonas putida KT2440]
                           276
                           89.49
                           95.28
                           1
                           1243.0
     

     
     
137612
                           gb|AAO54107.1|
                           (AE016857) polyamine ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           276
                           88.40
                           93.84
                           3
                           1223.0
     

     
     
137613
                           emb|CAD15433.1|
                           (AL646066) PROBABLE TRANSMEMBRANE ABC TRANSPORTER PROTEIN [Ralstonia solanacearum]
                           276
                           68.11
                           81.15
                           4
                           974.0
     

     






      

          
GC ORFID: 45976How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0606Glimmer Score: 

          
Start: 6482626Stop: 6483456

          
Length: 831


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0606 translation of PA0606Homolog Bit Score 530.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2137 (ORF: BLASTX 475.0), psyr_15may02_Scaffold7_revised_gene6962 (ORF: BLASTX 203.0), t_PA0606 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAGTCCCTACATGTCCCCGGTCGAGCGCCTGTGGTTCTACTCCCTGCGCATCCTCTGCGGCCTGGTA 
CTGCTGTTCCTGGTACTGCCGGTGCTGGTCATCGTGCCGCTGTCGTTCAACTCCGGTACCTTCCTGGTCTAC 
CCGCTGCAAGGGTTCTCCCTGCGCTGGTACGCCGACTTCTTCCAGTCCGCCGAGTGGATGCGCTCGTTGACC 
AACAGCATGATCGTCGCTCCGGCGGCGACCCTGCTGGCGATGGTCTTCGGCACTCTGGCGGCGATCGGCCTG 
ACCCGCGGCGAGTTCCGCGGCAAGGCACTGGTGATGAGCCTGATGATTTCGCCGATGGTGGTGCCGGTGGTG 
ATCATCGGCGTGGCCAGCTACCTGTTCTTCGCTCCGCTCGGGCTCGGCAACAGCTACCTGTCGCTGATCGTG 
GTGCATGCGGTGCTCGGCGTGCCGTTCGTGATCATCACCGTCTCCGCGACCCTGCAGGGGTTCAACTACAAC 
CTGGTGCGCGCCGCCGCCAGCCTCGGCGCGCCGCCGCTGACCACCTTCTTCCGGGTGACCCTGCCGCTGATC 
GCTCCCGGGGTGATCTCCGGCGCGCTGTTCGCCTTCGCCACCTCGTTCGACGAAGTGGTAGTGACCCTCTTC 
CTCGCCGGCCCCGAGCAGGCCACCCTGCCGCGGCAGATGTTCAGCGGCATTCGCGAGAACCTGAGCCCCACC 
ATTGCCGCCGCGGCGACCTTGCTGATCGGTTTCTCCGTACTGCTGTTGCTGACCCTGGAGTGGCTGCGCGGG 
CGCAGCGAGAAGATGCGTACAGCACAACCCGGCGCCTGA